SMTL ID : 4gt3.1

ATP-bound form of the ERK2 kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: L.188, H.236, Y.237, L.238 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.236, A:L.238 GOL.5: 6 residues within 4Å: Chain A: L.79, L.80, F.82, R.83, G.89, I.90 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.79, A:R.83, A:I.90 Water bridges: A:H.84 GOL.6: 3 residues within 4Å: Chain A: D.322, S.324, D.325 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.322 Water bridges: A:D.325, A:D.325

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 15 residues within 4Å: Chain A: I.35, G.36, E.37, V.43, A.56, Q.109, D.110, L.111, M.112, D.115, N.158, L.160, C.170, D.171 Ligands: MG.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:I.35, A:D.110, A:M.112, A:D.115, A:D.171, A:D.171, A:D.171 Water bridges: A:S.157, A:N.158, A:N.158

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.3: 3 residues within 4Å: Chain A: N.158, D.171 Ligands: ATP.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.171, H2O.4, H2O.7 MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 4 residues within 4Å: Chain A: K.121, T.122, H.124, N.228 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pozharski, E. et al., ATP-bound form of the ERK2 kinase. TO BE PUBLISHED

Release Date

2012-09-12

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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