SMTL ID : 4q0a.1

Vitamin D Receptor complex with lithocholic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-mer

Ligands

4 x 4OA: (3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid(Non-covalent)

4OA.1: 16 residues within 4Å: Chain A: Y.24, Y.28, L.110, V.111, I.145, I.148, S.152, S.155, W.163, C.165, Y.172, V.177, H.182, L.186, L.187, H.272 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.110, A:V.111, A:I.145, A:I.148, A:W.163, A:Y.172, A:V.177, A:L.186, A:L.187 Hydrogen bonds: A:Y.24, A:Y.28, A:S.155, A:S.155 4OA.2: 11 residues within 4Å: Chain A: D.30, R.33, F.34, D.109, S.112, Y.113, Q.116 Chain C: R.35, P.105, M.287, Q.288 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:D.30, A:F.34, A:F.34, A:D.109, A:Y.113, C:P.105, C:Q.288 Water bridges: A:S.112, A:K.117, A:K.117, A:T.290, C:R.35 4OA.3: 16 residues within 4Å: Chain C: Y.24, Y.28, L.110, V.111, I.145, I.148, S.152, S.155, W.163, C.165, Y.172, V.177, H.182, L.186, L.187, H.272 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:L.110, C:V.111, C:I.145, C:I.148, C:W.163, C:Y.172, C:V.177, C:L.186, C:L.187 Hydrogen bonds: C:S.155, C:S.155 4OA.4: 11 residues within 4Å: Chain A: R.35, P.105, M.287, Q.288 Chain C: D.30, R.33, F.34, D.109, S.112, Y.113, Q.116 12 PLIP interactions: 4 interactions with chain A, 8 interactions with chain C Hydrophobic interactions: A:P.105, A:Q.288, C:D.30, C:F.34, C:F.34, C:D.109, C:Y.113 Water bridges: A:R.35, A:M.287, C:S.112, C:K.117, C:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Belorusova, A.Y. et al., Structural insights into the molecular mechanism of vitamin d receptor activation by lithocholic Acid involving a new mode of ligand recognition. J.Med.Chem. (2014)

Release Date

2014-07-02

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
C

B
D

D
D

Vitamin D3 receptor A

Nuclear receptor coactivator 2

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