SMTL ID : 9fw8.1

VDR complex with UG-650

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 01: (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(2~{S})-7-methyl-4-methylidene-7-oxidanyl-octan-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol

01.1: 19 residues within 4Å: Chain A: Y.24, Y.28, L.107, L.110, V.111, S.114, I.148, M.149, R.151, S.152, S.155, W.163, C.165, V.177, H.182, L.190, H.272, Y.276, L.289 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.107, A:L.110, A:W.163, A:W.163, A:V.177, A:L.190, A:L.289 Hydrogen bonds: A:Y.24, A:Y.24, A:Y.28, A:S.114, A:R.151, A:H.272 01.2: 19 residues within 4Å: Chain C: Y.24, Y.28, L.107, L.110, V.111, S.114, I.148, M.149, R.151, S.152, S.155, W.163, C.165, V.177, H.182, L.190, H.272, Y.276, L.289 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:L.107, C:L.110, C:W.163, C:W.163, C:V.177, C:L.190, C:L.289 Hydrogen bonds: C:Y.24, C:S.114, C:R.151, C:H.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomez-Bouzo, U. et al., Design, synthesis and biological evaluation of a novel non-Gemini analog of UVB1 and crystal structure of its complex with the vitamin D receptor. Bioorg.Chem. (2025)

Release Date

2025-05-07

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 2

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