SMTL ID : 4rce.1

Crystal structure of BACE1 in complex with aminooxazoline xanthene inhibitor 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 3LN: (4S)-2'-(2,2-dimethylpropoxy)-7'-(pyrimidin-5-yl)spiro[1,3-oxazole-4,9'-xanthen]-2-amine(Non-covalent)

3LN.1: 15 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, G.53, S.54, V.88, Y.90, W.95, F.127, W.134, I.137, D.247, G.249 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.49, A:V.88, A:F.127, A:W.134 Hydrogen bonds: A:D.51 Water bridges: A:G.32, A:D.247 pi-Stacking: A:Y.90

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 4 residues within 4Å: Chain A: H.64, T.122, E.123, S.124 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: K.126 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: K.258 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Epstein, O. et al., Lead Optimization and Modulation of hERG Activity in a Series of Aminooxazoline Xanthene beta-Site Amyloid Precursor Protein Cleaving Enzyme (BACE1) Inhibitors. J.Med.Chem. (2014)

Release Date

2014-12-24

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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