SMTL ID : 4rw9.1

Crystal Structure of HIV-1 Reverse Transcriptase (Y181C) variant in complex with (E)-3-(3-chloro-5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile (JLJ532), a non-nucleoside inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 3X6: (2E)-3-(3-chloro-5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile(Non-covalent)

3X6.1: 18 residues within 4Å: Chain A: P.97, L.102, K.103, K.104, K.105, V.108, V.110, V.181, C.183, Y.190, V.191, G.192, F.229, W.231, L.236, H.237, P.238, Y.320 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.102, A:K.105, A:V.110, A:V.181, A:Y.190, A:Y.190, A:Y.190, A:W.231, A:L.236 Hydrogen bonds: A:K.105, A:K.105 pi-Stacking: A:W.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frey, K.M. et al., Structure-Based Evaluation of Non-nucleoside Inhibitors with Improved Potency and Solubility That Target HIV Reverse Transcriptase Variants. J.Med.Chem. (2015)

Release Date

2015-04-29

Peptides

Reverse transcriptase/ribonuclease H, p66 subunit: A
Reverse transcriptase/ribonuclease H, p51 subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H, p66 subunit

Reverse transcriptase/ribonuclease H, p51 subunit

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