SMTL ID : 2c90.1

thrombin inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain B: L.130, I.167, V.168, R.170, F.186 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain B: R.233, K.236 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.233 Water bridges: B:R.233, B:G.235

1 x C1M: 1-(4-CHLOROPHENYL)-1H-TETRAZOLE(Non-covalent)

C1M.3: 14 residues within 4Å: Chain B: D.199, A.200, C.201, E.202, S.205, V.225, S.226, W.227, G.228, G.230, C.231, G.238, F.239, Y.240 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.200, B:V.225 Water bridges: B:G.228, B:G.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Howard, N. et al., Application of Fragment Screening and Fragment Linking to the Discovery of Novel Thrombin Inhibitors. J.Med.Chem. (2006)

Release Date

2006-07-04

Peptides

THROMBIN LIGHT CHAIN: A
THROMBIN HEAVY CHAIN: B
HIRUDIN VARIANT-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
I

THROMBIN LIGHT CHAIN

THROMBIN HEAVY CHAIN

HIRUDIN VARIANT-2

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