SMTL ID : 5lpd.1

Thrombin in complex with (S)-1-((R)-2-amino-3-cyclohexylpropanoyl)-N-(2-(aminomethyl)-5-chlorobenzyl) pyrrolidine-2-carboxamide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.50 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
2 x NA: SODIUM ION(Non-functional Binders)
1 x PO4: PHOSPHATE ION(Non-functional Binders)
1 x GOL: GLYCEROL(Non-functional Binders)
1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
1 x 71U: (2~{S})-~{N}-[[2-(aminomethyl)-5-chloranyl-phenyl]methyl]-1-[(2~{R})-2-azanyl-3-cyclohexyl-propanoyl]pyrrolidine-2-carboxamide(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Sandner, A. et al., Strategies for Late-Stage Optimization: Profiling Thermodynamics by Preorganization and Salt Bridge Shielding. J.Med.Chem. (2019)
Release Date
2017-07-26
Peptides
Thrombin light chain: A
Thrombin heavy chain: B
Hirudin variant-2: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
L
B
H
C
I

Thrombin light chain

Thrombin heavy chain

Hirudin variant-2

Related Entries With Identical Sequence

1a2c.1 | 1a3b.1 | 1a3e.1 | 1a46.1 | 1a4w.1 | 1a5g.1 | 1a61.1 | 1abi.1 | 1abj.1 | 1ad8.1 | 1ae8.1 | 1afe.1 | 1aht.1 | 1ai8.1 | 1aix.1 | 1awf.1 | 1awh.1 | 1awh.2 | 1ay6.1 | 1b5g.1 | 1b7x.1 | 1ba8.1 | 1bb0.1 | 1bcu.1 | 1bmm.1 | 1bmn.1 | 1bth.1 | 1bth.2 | 1c1u.1 | 1c1v.1  more...