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SMTL ID : 1p8v.1

CRYSTAL STRUCTURE OF THE COMPLEX OF PLATELET RECEPTOR GPIB-ALPHA AND ALPHA-THROMBIN AT 2.6A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1:	11 residues within 4Å: Chain A: A.165, G.166, L.168, N.169, G.190, F.191, F.192, G.193, T.273, D.274, L.275 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.169, A:T.273 Water bridges: A:G.170
MES.4:	11 residues within 4Å: Chain D: A.165, G.166, L.168, N.169, G.190, F.191, F.192, G.193, T.273, D.274, L.275 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.169, D:T.273 Water bridges: D:G.170

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2:	3 residues within 4Å: Chain C: L.46, N.53, T.55 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.46
NAG.5:	3 residues within 4Å: Chain F: L.46, N.53, T.55 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:L.46

2 x DFP: DIISOPROPYL PHOSPHONATE(Covalent)

DFP.3:	10 residues within 4Å: Chain C: C.28, H.43, W.50, K.52, C.201, E.202, G.203, S.205, S.226, W.227 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:W.50 Hydrogen bonds: C:E.202, C:G.203, C:S.205 Salt bridges: C:H.43
DFP.6:	10 residues within 4Å: Chain F: C.28, H.43, W.50, K.52, C.201, E.202, G.203, S.205, S.226, W.227 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:W.50 Hydrogen bonds: F:G.203, F:S.205 Salt bridges: F:H.43

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Dumas, J.J. et al., Crystal Structure of the GpIbalpha-Thrombin Complex Essential for Platelet Aggregation. Science (2003)

Release Date

2003-07-22

Peptides

Platelet glycoprotein Ib alpha chain: AD
Prothrombin: BE
Prothrombin: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

B
B

E
B

C
C

F
C

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Platelet glycoprotein Ib alpha chain

Toggle Identical (AD)

Prothrombin

Toggle Identical (BE)

Prothrombin

Toggle Identical (CF)

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