SMTL ID : 5lce.1

Thrombin in complex with (S)-1-((R)-2-amino-3-cyclohexylpropanoyl)-N-(5-chloro-2-(hydroxymethyl)benzy l)pyrrolidine-2-carboxamide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.39 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x 6TH: (2~{S})-1-[(2~{R})-2-azanyl-3-cyclohexyl-propanoyl]-~{N}-[[5-chloranyl-2-(hydroxymethyl)phenyl]methyl]pyrrolidine-2-carboxamide(Non-covalent)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x PO4: PHOSPHATE ION(Non-functional Binders)
1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
2 x NA: SODIUM ION(Non-functional Binders)
1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
3 x GOL: GLYCEROL(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Sandner, A. et al., Strategies for Late-Stage Optimization: Profiling Thermodynamics by Preorganization and Salt Bridge Shielding. J.Med.Chem. (2019)
Release Date
2017-07-26
Peptides
Prothrombin: A
Prothrombin: B
Hirudin variant-2: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
L
B
H
C
I

Prothrombin

Prothrombin

Hirudin variant-2

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