- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.75 Å
- Oligo State
- hetero-2-2-1-1-mer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.1: 3 residues within 4Å:- Chain A: Q.11, E.71
- Ligands: GTP.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.71, H2O.1, H2O.1, H2O.1
MG.5: 2 residues within 4Å:- Chain B: Q.11
- Ligands: GDP.4
No protein-ligand interaction detected (PLIP)MG.9: 3 residues within 4Å:- Chain C: Q.11, E.71
- Ligands: GTP.10
No protein-ligand interaction detected (PLIP)MG.14: 4 residues within 4Å:- Chain D: Q.11, N.99, D.177
- Ligands: GDP.13
No protein-ligand interaction detected (PLIP)- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
GTP.2: 24 residues within 4Å:- Chain A: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, I.171, V.177, S.178, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain B: K.252
- Ligands: MG.1
26 PLIP interactions:24 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Q.11, A:A.12, A:E.71, A:A.99, A:A.100, A:N.101, A:N.101, A:S.140, A:G.143, A:G.144, A:T.145, A:V.177, A:T.179, A:T.179, A:E.183, A:N.206, A:N.206, A:N.228, A:N.228
- Water bridges: A:D.69, A:D.69, A:D.98, A:T.145, A:T.145, B:K.252
- Salt bridges: B:K.252
GTP.10: 23 residues within 4Å:- Chain C: G.10, Q.11, A.12, Q.15, D.69, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain D: K.252
- Ligands: MG.9
25 PLIP interactions:21 interactions with chain C, 4 interactions with chain D- Hydrogen bonds: C:Q.11, C:A.12, C:A.99, C:N.101, C:N.101, C:S.140, C:G.143, C:G.144, C:T.145, C:G.146, C:T.179, C:E.183, C:N.206, C:N.206, C:N.228, C:N.228
- Water bridges: C:E.71, C:E.71, C:E.71, D:K.252, D:K.252, D:K.252
- pi-Stacking: C:Y.224, C:Y.224
- Salt bridges: D:K.252
- 3 x CA: CALCIUM ION(Non-covalent)
CA.3: 7 residues within 4Å:- Chain A: D.39, T.41, G.44, G.45, F.49, N.50, E.55
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.39, A:T.41, A:G.44, A:E.55
CA.7: 2 residues within 4Å:- Chain B: E.108, E.111
No protein-ligand interaction detected (PLIP)CA.11: 4 residues within 4Å:- Chain C: D.39, T.41, G.44, E.55
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.39, C:D.39, C:G.44, C:E.55, H2O.1
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.4: 21 residues within 4Å:- Chain B: G.10, Q.11, C.12, Q.15, I.16, S.138, G.140, G.141, G.142, T.143, G.144, P.171, V.175, D.177, E.181, N.204, L.207, Y.222, L.225, N.226
- Ligands: MG.5
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:Q.11, B:C.12, B:S.138, B:G.142, B:T.143, B:G.144, B:V.175, B:E.181, B:N.204, B:N.204, B:N.226, B:N.226
- Water bridges: B:N.99, B:N.99
- pi-Stacking: B:Y.222, B:Y.222
GDP.13: 18 residues within 4Å:- Chain D: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, V.175, D.177, E.181, N.204, Y.222, N.226
- Ligands: MG.14
16 PLIP interactions:16 interactions with chain D- Hydrogen bonds: D:Q.11, D:Q.11, D:C.12, D:N.99, D:S.138, D:G.142, D:T.143, D:T.143, D:G.144, D:V.175, D:E.181, D:N.204, D:N.226, D:N.226, D:N.226
- Water bridges: D:Q.11
- 2 x 4EE: 6-(4-ethoxyphenyl)-3-(2-methoxyphenyl)-7H-[1,2,4]triazolo[3,4-b][1,3,4]thiadiazine(Non-covalent)
4EE.6: 19 residues within 4Å:- Chain A: T.179, V.181
- Chain B: V.236, C.239, L.246, A.248, K.252, L.253, N.256, M.257, T.312, V.313, A.314, A.315, I.316, N.348, K.350, A.352, I.368
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:A.314, B:I.316, B:I.316, B:K.350, B:I.368
4EE.15: 20 residues within 4Å:- Chain C: T.179, A.180, V.181
- Chain D: C.239, L.240, L.246, A.248, D.249, K.252, L.253, N.256, T.312, V.313, A.314, A.315, I.316, N.348, K.350, A.352, I.368
11 PLIP interactions:9 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:L.253, D:N.256, D:T.312, D:A.314, D:I.316, D:I.316, D:K.350, D:K.350, D:I.368, C:A.180
- Hydrogen bonds: C:V.181
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.8: 10 residues within 4Å:- Chain A: W.407
- Chain B: R.156, P.160, D.161, R.162, I.163, M.164, N.195, D.197, R.251
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:D.197, B:R.251
- 1 x IMD: IMIDAZOLE(Non-covalent)
IMD.12: 3 residues within 4Å:- Chain C: Y.262, D.431, E.434
1 PLIP interactions:1 interactions with chain C- pi-Stacking: C:Y.262
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McNamara, D.E. et al., Structures of potent anticancer compounds bound to tubulin. Protein Sci. (2015)
- Release Date
- 2015-05-27
- Peptides
- Tubulin alpha-1B chain: AC
Tubulin beta-2B chain: BD
Stathmin-4: E
Tubulin-tyrosine ligase: F - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
EF
F
SMTL ID : 4yj3.1
Crystal structure of tubulin bound to compound 2
Tubulin alpha-1B chain
Tubulin beta-2B chain
Stathmin-4
Tubulin-tyrosine ligase
Related Entries With Identical Sequence
3j8x.1 | 3j8y.1 | 3jak.1 | 3jal.1 | 3jar.1 | 3jas.1 | 3jat.1 | 3jaw.1 | 3ryc.1 | 3ryf.1 | 3ryh.1 | 3ryi.1 | 3ut5.1 | 4eb6.1 | 4f61.1 | 4f6r.1 | 4hna.1 | 4i4t.1 | 4i50.1 | 4i55.1 | 4ihj.1 | 4iij.1 | 4lnu.1 | 4o2a.1 | 4o2b.1 | 4o4h.1 | 4o4i.1 | 4o4j.1 | 4o4l.1 | 4tuy.1 more...less...4tv8.1 | 4tv9.1 | 4yj2.1 | 4zhq.1 | 4zi7.1 | 4zol.1 | 5bmv.1 | 5c8y.1 | 5ca0.1 | 5ca1.1 | 5cb4.1 | 5eib.1 | 5eyp.1 | 5ezy.1 | 5fnv.1 | 5h74.1 | 5h7o.1 | 5itz.1 | 5iyz.1 | 5j2t.1 | 5j2u.1 | 5jcb.1 | 5jh7.1 | 5jqg.1 | 5jvd.1 | 5kx5.1 | 5la6.1 | 5lov.1 | 5lp6.1 | 5lxs.1 | 5lxt.1 | 5lyj.1 | 5m7e.1 | 5m7g.1 | 5m8d.1 | 5m8g.1 | 5mf4.1 | 5mio.1 | 5mio.2 | 5nfz.1 | 5ng1.1 | 5njh.1 | 5nm5.1 | 5nqt.1 | 5nqu.1 | 5o7a.1 | 5osk.1 | 5ov7.1 | 5s4l.1 | 5s4m.1 | 5s4n.1 | 5s4o.1 | 5s4p.1 | 5s4q.1 | 5s4r.1 | 5s4s.1 | 5s4t.1 | 5s4u.1 | 5s4v.1 | 5s4w.1 | 5s4x.1 | 5s4y.1 | 5s4z.1 | 5s50.1 | 5s51.1 | 5s52.1 | 5s53.1 | 5s54.1 | 5s55.1 | 5s56.1 | 5s57.1 | 5s58.1 | 5s59.1 | 5s5a.1 | 5s5b.1 | 5s5c.1 | 5s5d.1 | 5s5e.1 | 5s5f.1 | 5s5g.1 | 5s5h.1 | 5s5i.1 | 5s5j.1 | 5s5k.1 | 5s5l.1 | 5s5m.1 | 5s5n.1 | 5s5o.1 | 5s5p.1 | 5s5q.1 | 5s5r.1 | 5s5s.1 | 5s5t.1 | 5s5u.1 | 5s5v.1 | 5s5w.1 | 5s5x.1 | 5s5y.1 | 5s5z.1 | 5s60.1 | 5s61.1 | 5s62.1 | 5s63.1 | 5s64.1 | 5s65.1 | 5s66.1 | 5s67.1 | 5sb3.1 | 5sb4.1 | 5sb5.1 | 5sb6.1 | 5sb7.1 | 5sb8.1 | 5sb9.1 | 5sba.1 | 5sbb.1 | 5sbc.1 | 5sbd.1 | 5sbe.1 | 5xaf.1 | 5xag.1 | 5xhc.1 | 5xi5.1 | 5xi7.1 | 5xiw.1 | 5xke.1 | 5xkf.1 | 5xkg.1 | 5xkh.1 | 5xlt.1 | 5xlz.1 | 5xp3.1 | 5yl2.1 | 5yl4.1 | 5ylj.1 | 5yls.1 | 5yz3.1 | 5z4u.1 | 5zxh.1 | 6agk.1 | 6b0c.1 | 6b0c.2 | 6b0i.1 | 6b0i.2 | 6b0l.1 | 6b0l.2 | 6bbn.1 | 6bjc.1 | 6br1.1 | 6brf.1 | 6bry.1 | 6bs2.1 | 6cvj.1 | 6cvj.2 | 6cvn.1 | 6cvn.2 | 6d88.1 | 6dpu.1 | 6dpv.1 | 6dpw.1 | 6eg5.1 | 6evx.1 | 6evy.1 | 6evz.1 | 6ew0.1 | 6f7c.1 | 6fii.1 | 6fjf.1 | 6fjm.1 | 6fkj.1 | 6fkl.1 | 6gf3.1 | 6gj4.1 | 6gvm.1 | 6gvn.1 | 6gvn.2 | 6gwc.1 | 6gwd.1 | 6gx7.1 | 6gx7.2 | 6gze.1 | 6hx8.1 | 6i2i.1 | 6jcj.1 | 6k9v.1 | 6knz.1 | 6kpp.1 | 6ls4.1 | 6lsm.1 | 6lsn.1 | 6n47.1 | 6nng.1 | 6o2q.1 | 6o2r.1 | 6o2s.1 | 6o2s.2 | 6o2s.3 | 6o2s.4 | 6o2s.5 | 6o2s.6 | 6o2s.7 | 6o2s.8 | 6o2s.9 | 6o2s.10 | 6o2s.11 | 6o2s.12 | 6o2s.13 | 6o2s.27 | 6o2s.28 | 6o2s.29 | 6o2s.30 | 6o2s.31 | 6o2s.32 | 6o2s.33 | 6o2s.34 | 6o2s.35 | 6o2s.36 | 6o2s.37 | 6o2s.38 | 6o2s.39 | 6o2s.53 | 6o2s.54 | 6o2s.55 | 6o2s.56 | 6o2s.57 | 6o2s.58 | 6o2s.59 | 6o2s.60 | 6o2s.61 | 6o2s.62 | 6o2s.63 | 6o2s.64 | 6o2s.65 | 6o2s.79 | 6o2s.80 | 6o2s.81 | 6o2s.82 | 6o2s.83 | 6o2s.84 | 6o2s.85 | 6o2s.86 | 6o2s.87 | 6o2s.88 | 6o2s.89 | 6o2s.90 | 6o2s.91 | 6o2t.1 | 6o2t.2 | 6o2t.3 | 6o2t.4 | 6o2t.5 | 6o2t.6 | 6o2t.7 | 6o2t.8 | 6o2t.9 | 6o2t.10 | 6o2t.11 | 6o2t.12 | 6o2t.13 | 6o2t.27 | 6o2t.28 | 6o2t.29 | 6o2t.30 | 6o2t.31 | 6o2t.32 | 6o2t.33 | 6o2t.34 | 6o2t.35 | 6o2t.36 | 6o2t.37 | 6o2t.38 | 6o2t.39 | 6o2t.53 | 6o2t.54 | 6o2t.55 | 6o2t.56 | 6o2t.57 | 6o2t.58 | 6o2t.59 | 6o2t.60 | 6o2t.61 | 6o2t.62 | 6o2t.63 | 6o2t.64 | 6o2t.65 | 6o2t.79 | 6o2t.80 | 6o2t.81 | 6o2t.82 | 6o2t.83 | 6o2t.84 | 6o2t.85 | 6o2t.86 | 6o2t.87 | 6o2t.88 | 6o2t.89 | 6o2t.90 | 6o2t.91 | 6o5m.1 | 6o5n.1 | 6o61.1 | 6pc4.1 | 6qqn.1 | 6qtn.1 | 6qus.1 | 6quy.1 | 6qve.1 | 6qvj.1 | 6s8k.1 | 6s8l.1 | 6s9e.1 | 6ses.1 | 6tde.1 | 6th4.1 | 6wvl.1 | 6wvm.1 | 6wvr.1 | 6wwe.1 | 6wwf.1 | 6wwg.1 | 6wwh.1 | 6wwi.1 | 6wwj.1 | 6wwk.1 | 6wwl.1 | 6wwm.1 | 6wwn.1 | 6wwo.1 | 6wwp.1 | 6wwq.1 | 6wwr.1 | 6wws.1 | 6wwt.1 | 6wwu.1 | 6wwv.1 | 6x1c.1 | 6x1e.1 | 6x1f.1 | 6y4m.1 | 6y4n.1 | 6y6d.1 | 6zwb.1 | 6zwc.1 | 7ac5.1 | 7alr.1 | 7au5.1 | 7cbz.1 | 7cda.1 | 7ce6.1 | 7ce8.1 | 7cek.1 | 7cld.1 | 7cnm.1 | 7cnn.1 | 7cno.1 | 7cpd.1 | 7cpq.1 | 7dad.1 | 7dae.1 | 7daf.1 | 7db9.1 | 7dba.1 | 7dbb.1 | 7dbc.1 | 7dbd.1 | 7dmz.1 | 7dn0.1 | 7dp8.1 | 7e4z.1 | 7emj.1 | 7en3.1 | 7exc.1 | 7jfr.1 | 7l05.1 | 7lvq.1 | 7lvr.1 | 7lxb.1 | 7lz7.1 | 7lz8.1 | 7m18.1 | 7m20.1 | 7nb8.1 | 7nba.1 | 7odn.1 | 7ogn.1 | 7pjf.1 | 7pqc.1 | 7pqp.1 | 7q1e.1 | 7q1f.1 | 7q1f.2 | 7rs6.1 | 7sgs.1 | 7tqx.1 | 7tqy.1 | 7tqz.1 | 7tr0.1 | 7tr1.1 | 7tr2.1 | 7tr3.1 | 7vmg.1 | 7vmj.1 | 7vmk.1 | 7xqx.1 | 7xqy.1 | 7xr0.1 | 7xr1.1 | 7yhn.1 | 7ysn.1 | 7yso.1 | 7ysp.1 | 7yyy.1 | 7yyz.1 | 7yz0.1 | 7yz1.1 | 7yz2.1 | 7yz3.1 | 7yz5.1 | 7yz6.1 | 7z01.1 | 7z02.1 | 7z0f.1 | 7z0g.1 | 7z0g.2 | 7z2n.1 | 7z2p.1 | 7z7d.1 | 7zcw.1 | 7zx2.1 | 7zyw.1 | 8a0l.1 | 8a9t.1 | 8a9z.1 | 8ahm.1 | 8asn.1 | 8b7a.1 | 8b7b.1 | 8b7c.1 | 8bde.1 | 8bdf.1 | 8bdg.1 | 8c0f.1 | 8c5c.1 | 8cgz.1 | 8cld.1 | 8diq.1 | 8f18.1 | 8f1a.1 | 8huh.1 | 8jjb.1 | 8jjc.1 | 8qea.1 | 8ql2.1 | 8ql3.1 | 8ql4.1 | 8ql5.1 | 8ql6.1 | 8ql7.1 | 8ql8.1 | 8ql9.1 | 8qla.1 | 8qlb.1 | 8r67.1 | 8rc1.1 | 8rhb.1 | 8rhh.1 | 8rik.1 | 8riv.1 | 8riw.1 | 8riz.1 | 8t42.1 | 8u3z.1 | 8utn.1 | 8uto.1 | 8utp.1 | 8utq.1 | 8utr.1 | 8uts.1 | 8utt.1 | 8utu.1 | 8utv.1 | 8utw.1 | 8uty.1 | 8v4k.1 | 8v4l.1 | 8v4m.1 | 8wd0.1 | 8wmo.1 | 8zb8.1 | 9bp6.1 | 9f07.1 | 9f8g.1 | 9fyd.1 | 9gnq.1