SMTL ID : 5c87.1

Crystal structure of the human BRPF1 bromodomain in complex with SEED2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 3 residues within 4Å: Chain A: S.78, L.81, K.82 No protein-ligand interaction detected (PLIP)

1 x 4YS: isoquinolin-1(2H)-one(Non-covalent)

4YS.2: 9 residues within 4Å: Chain A: I.28, F.29, V.33, Y.41, N.79, C.80, Y.83, N.84, F.90 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.33, A:Y.41, A:Y.83, A:F.90 Hydrogen bonds: A:Y.41, A:N.84 Water bridges: A:C.80, A:C.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., Twenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions. J.Med.Chem. (2016)

Release Date

2016-05-25

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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