SMTL ID : 5eww.1

Crystal structure of the human BRPF1 bromodomain in complex with SEED21

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x 5SK: ~{N}-[(2~{R})-butan-2-yl]-1-methyl-[1,2,4]triazolo[4,3-a]quinoxalin-4-amine(Non-covalent)

5SK.1: 9 residues within 4Å: Chain A: I.28, F.29, V.33, P.34, V.38, C.80, Y.83, N.84, F.90 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.29, A:V.33, A:P.34, A:Y.83, A:F.90 Hydrogen bonds: A:N.84, A:N.84 pi-Stacking: A:F.90, A:F.90

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 5 residues within 4Å: Chain A: L.81, K.86, Y.91, V.95, R.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.91, A:R.98, A:R.98 Water bridges: A:K.86, A:K.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., Crystal structure of the human BRPF1 bromodomain in complex with SEED21. To Be Published

Release Date

2016-11-02

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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