SMTL ID : 5dya.1

Crystal structure of the human BRPF1 bromodomain in complex with SEED5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 4 residues within 4Å: Chain A: L.81, Y.91, V.95, R.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.91, A:Y.91, A:R.98, A:R.98

1 x 5GV: (2R)-2-ethyl-3-oxo-1,2,3,4-tetrahydroquinoxaline-6-carboxylic acid(Non-covalent)

5GV.2: 9 residues within 4Å: Chain A: I.28, F.29, V.33, P.34, E.37, V.38, C.80, N.84, F.90 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.28, A:F.29, A:V.38, A:F.90, A:F.90, A:F.90 Hydrogen bonds: A:I.28, A:N.84 Water bridges: A:N.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., Twenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions. J.Med.Chem. (2016)

Release Date

2016-05-25

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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