SMTL ID : 5t4v.1

Crystal structure of the bromodomain of human BRPF1 in complex with NI-48 ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x N48: 4-cyano-N-(7-methoxy-1,4-dimethyl-2-oxo-1,2-dihydroquinolin-6-yl)benzene-1-sulfonamide(Non-covalent)

N48.1: 12 residues within 4Å: Chain A: I.28, F.29, E.31, P.32, V.33, P.34, E.37, V.38, C.80, N.84, I.89, F.90 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.90, A:F.90, A:F.90 Hydrogen bonds: A:N.84 pi-Stacking: A:F.90, A:F.90

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.82, Y.83, N.84, A.85 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.82, A:Y.83

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 3 residues within 4Å: Chain A: Q.56, A.60, R.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.62, A:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Igoe, N. et al., Design of a Biased Potent Small Molecule Inhibitor of the Bromodomain and PHD Finger-Containing (BRPF) Proteins Suitable for Cellular and in Vivo Studies. J. Med. Chem. (2017)

Release Date

2017-02-08

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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