SMTL ID : 5e3g.1

Crystal structure of the human BRPF1 bromodomain in complex with SEED8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 5JQ: 2-thioxo-2,3,7,9-tetrahydro-1H-purine-6,8-dione(Non-covalent)

5JQ.1: 7 residues within 4Å: Chain A: I.28, V.33, P.34, V.38, Y.83, N.84, F.90 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.84, A:N.84 pi-Stacking: A:F.90, A:F.90

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 4 residues within 4Å: Chain A: L.81, Y.91, V.95, R.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.91, A:R.98, A:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., Twenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions. J.Med.Chem. (2016)

Release Date

2016-05-25

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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