SMTL ID : 6ler.1 (1 other biounit)

169 bp nucleosome harboring non-identical cohesive DNA termini.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

6 x CA: CALCIUM ION(Non-functional Binders)

CA.1: 1 residues within 4Å: Chain I: G.130 No protein-ligand interaction detected (PLIP) CA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.3: 3 residues within 4Å: Chain I: C.144, G.145, G.146 No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain I: G.139 No protein-ligand interaction detected (PLIP) CA.6: 1 residues within 4Å: Chain J: G.112 No protein-ligand interaction detected (PLIP) CA.7: 2 residues within 4Å: Chain J: A.130, G.131 No protein-ligand interaction detected (PLIP)

2 x K: POTASSIUM ION(Non-functional Binders)

K.5: 3 residues within 4Å: Chain I: A.111 Chain J: T.57, A.58 No protein-ligand interaction detected (PLIP) K.8: 1 residues within 4Å: Chain J: G.139 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adhireksan, Z. et al., Engineering nucleosomes for generating diverse chromatin assemblies. Nucleic Acids Res. (2021)

Release Date

2021-03-03

Peptides

Histone H3.1: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-J: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Histone H3.1

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

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