- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-4-4-4-4-2-mer
- Ligands
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.1: 3 residues within 4Å:- Chain A: M.121, P.122, K.123
Ligand excluded by PLIPCL.5: 6 residues within 4Å:- Chain C: G.45, A.46, G.47, A.48
- Chain D: T.91, S.92
Ligand excluded by PLIPCL.7: 3 residues within 4Å:- Chain E: M.121, P.122, K.123
Ligand excluded by PLIPCL.11: 6 residues within 4Å:- Chain G: G.45, A.46, G.47, A.48
- Chain H: T.91, S.92
Ligand excluded by PLIPCL.32: 3 residues within 4Å:- Chain K: M.121, P.122, K.123
Ligand excluded by PLIPCL.33: 6 residues within 4Å:- Chain M: G.45, A.46, G.47, A.48
- Chain N: T.91, S.92
Ligand excluded by PLIPCL.36: 3 residues within 4Å:- Chain O: M.121, P.122, K.123
Ligand excluded by PLIPCL.41: 6 residues within 4Å:- Chain Q: G.45, A.46, G.47, A.48
- Chain R: T.91, S.92
Ligand excluded by PLIP- 52 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)
CA.2: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.3: 2 residues within 4Å:- Chain C: E.65
- Chain D: V.49
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:V.49
CA.4: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.8: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.9: 1 residues within 4Å:- Chain G: G.23
No protein-ligand interaction detected (PLIP)CA.10: 2 residues within 4Å:- Chain G: E.62, D.91
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:E.62
CA.12: 3 residues within 4Å:- Chain I: G.31, C.32
- Chain J: G.134
No protein-ligand interaction detected (PLIP)CA.13: 2 residues within 4Å:- Chain I: G.134
- Chain J: G.31
No protein-ligand interaction detected (PLIP)CA.14: 2 residues within 4Å:- Chain I: G.34
- Chain J: G.131
No protein-ligand interaction detected (PLIP)CA.15: 4 residues within 4Å:- Chain I: G.42, G.43
- Chain J: A.122, C.123
No protein-ligand interaction detected (PLIP)CA.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.17: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.18: 1 residues within 4Å:- Chain I: G.131
No protein-ligand interaction detected (PLIP)CA.19: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.22: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.23: 2 residues within 4Å:- Chain J: C.35, T.36
No protein-ligand interaction detected (PLIP)CA.24: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.25: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.26: 2 residues within 4Å:- Chain J: G.34, C.35
No protein-ligand interaction detected (PLIP)CA.27: 2 residues within 4Å:- Chain J: C.26, C.27
No protein-ligand interaction detected (PLIP)CA.28: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.29: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.30: 2 residues within 4Å:- Chain J: A.111, G.112
No protein-ligand interaction detected (PLIP)CA.35: 2 residues within 4Å:- Chain M: E.65
- Chain N: V.49
2 PLIP interactions:1 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: N:V.49, H2O.3
CA.37: 1 residues within 4Å:- Chain Q: E.65
No protein-ligand interaction detected (PLIP)CA.38: 2 residues within 4Å:- Chain Q: E.62, D.91
No protein-ligand interaction detected (PLIP)CA.39: 1 residues within 4Å:- Chain Q: E.93
1 PLIP interactions:1 interactions with chain Q- Metal complexes: Q:E.93
CA.40: 1 residues within 4Å:- Chain R: K.117
No protein-ligand interaction detected (PLIP)CA.42: 3 residues within 4Å:- Chain S: G.134, C.135
- Chain T: G.31
No protein-ligand interaction detected (PLIP)CA.43: 3 residues within 4Å:- Chain S: G.31, C.32
- Chain T: G.134
No protein-ligand interaction detected (PLIP)CA.44: 2 residues within 4Å:- Chain S: G.59
- Chain T: G.106
No protein-ligand interaction detected (PLIP)CA.45: 2 residues within 4Å:- Chain S: G.145, G.146
No protein-ligand interaction detected (PLIP)CA.46: 1 residues within 4Å:- Chain S: G.112
No protein-ligand interaction detected (PLIP)CA.47: 2 residues within 4Å:- Chain S: G.80, G.81
No protein-ligand interaction detected (PLIP)CA.48: 3 residues within 4Å:- Chain S: G.93, C.94
- Chain T: G.72
No protein-ligand interaction detected (PLIP)CA.49: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.50: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.51: 1 residues within 4Å:- Chain S: G.131
No protein-ligand interaction detected (PLIP)CA.52: 1 residues within 4Å:- Chain S: G.23
No protein-ligand interaction detected (PLIP)CA.53: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.54: 1 residues within 4Å:- Chain S: G.80
No protein-ligand interaction detected (PLIP)CA.55: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.56: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.57: 1 residues within 4Å:- Chain S: A.69
No protein-ligand interaction detected (PLIP)CA.58: 2 residues within 4Å:- Chain S: T.152, G.153
No protein-ligand interaction detected (PLIP)CA.59: 1 residues within 4Å:- Chain S: G.151
No protein-ligand interaction detected (PLIP)CA.62: 1 residues within 4Å:- Chain T: G.23
No protein-ligand interaction detected (PLIP)CA.63: 1 residues within 4Å:- Chain T: G.112
No protein-ligand interaction detected (PLIP)CA.64: 2 residues within 4Å:- Chain T: G.80, G.81
No protein-ligand interaction detected (PLIP)CA.65: 2 residues within 4Å:- Chain T: G.42, G.43
No protein-ligand interaction detected (PLIP)CA.66: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.67: 2 residues within 4Å:- Chain T: T.66, T.67
No protein-ligand interaction detected (PLIP)- 8 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
K.6: 3 residues within 4Å:- Chain C: N.39
- Chain G: N.39
- Chain H: S.79
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain G- Metal complexes: C:N.39, G:N.39
K.20: 3 residues within 4Å:- Chain I: T.57, A.58
- Chain J: A.111
No protein-ligand interaction detected (PLIP)K.21: 1 residues within 4Å:- Chain I: A.119
No protein-ligand interaction detected (PLIP)K.31: 3 residues within 4Å:- Chain I: A.111
- Chain J: T.57, A.58
No protein-ligand interaction detected (PLIP)K.34: 2 residues within 4Å:- Chain M: N.39
- Chain Q: N.39
2 PLIP interactions:1 interactions with chain M, 1 interactions with chain Q- Metal complexes: M:N.39, Q:N.39
K.60: 3 residues within 4Å:- Chain S: T.57, A.58
- Chain T: A.111
No protein-ligand interaction detected (PLIP)K.61: 1 residues within 4Å:- Chain S: A.119
No protein-ligand interaction detected (PLIP)K.68: 3 residues within 4Å:- Chain S: A.111
- Chain T: T.57, A.58
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Adhireksan, Z. et al., Linker Histones Associate Heterogeneously with Nucleosomes in the Condensed State. To Be Published
- Release Date
- 2024-04-03
- Peptides
- Histone H3.1: AEKO
Histone H4: BFLP
Histone H2A type 1-B/E: CGMQ
Histone H2B type 1-J: DHNR
Histone H1x: UV - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EK
KO
OB
BF
FL
LP
PC
CG
GM
MQ
QD
DH
HN
NR
RU
UV
V
SMTL ID : 8yti.1
Crystal Structure of Nucleosome-H1x Linker Histone Assembly (sticky-169a DNA fragment)
Histone H3.1
Toggle Identical (AO)Histone H4
Histone H2A type 1-B/E
Toggle Identical (CM)Histone H2B type 1-J
Toggle Identical (NR)Histone H1x
Related Entries With Identical Sequence
1eqz.1 | 1f66.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 3nqu.1 | 3r45.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5kgf.1 | 5o9g.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5x0x.1 | 5xf3.1 more...less...5xf4.1 | 5xf5.1 | 6buz.1 | 6e0c.1 | 6e0p.1 | 6ftx.1 | 6g0l.1 | 6hts.1 | 6i84.1 | 6j99.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6l9z.1 | 6la2.1 | 6la8.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6ne3.1 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6r0c.1 | 6r8y.1 | 6rny.1 | 6ryr.1 | 6ryu.1 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6tem.1 | 6upk.1 | 6upl.1 | 6v92.1 | 6vz4.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wkr.1 | 6y5d.1 | 6zhx.1 | 6zhy.1 | 7by0.1 | 7dbp.1 | 7jo9.1 | 7joa.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7m1x.1 | 7mbm.1 | 7mbn.1 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7otq.1 | 7pet.1 | 7peu.1 | 7pev.1 | 7pew.1 | 7pex.1 | 7pey.1 | 7pez.1 | 7pf0.1 | 7pf2.1 | 7pf3.1 | 7pf4.1 | 7pf5.1 | 7pf6.1 | 7pfa.1 | 7pfc.1 | 7pfd.1 | 7pfe.1 | 7pff.1 | 7pft.1 | 7pfu.1 | 7pfv.1 | 7pfw.1 | 7pfx.1 | 7pii.1 | 7r5r.1 | 7ssa.1 | 7tan.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7ud5.1 | 7unc.1 | 7und.1 | 7unk.1 | 7ux9.1 | 7v6q.1 | 7v6q.2 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7vcq.1 | 7vcq.2 | 7vcq.3 | 7vdt.1 | 7vdv.1 | 7vvu.1 | 7vvz.1 | 7x3t.1 | 7x3v.1 | 7x3w.1 | 7x3x.1 | 7xfc.1 | 7xfh.1 | 7xfi.1 | 7xfj.1 | 7xfl.1 | 7xfm.1 | 7xfn.1 | 7xnp.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7y7i.1 | 7ywx.1 | 7yyh.1 | 7zi4.1 | 8aag.1 | 8b0a.1 | 8bvw.1 | 8byq.1 | 8bz1.1 | 8dk5.1 | 8du4.1 | 8ett.1 | 8etv.1 | 8eu2.1 | 8eue.1 | 8euj.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8g6g.1 | 8g6h.1 | 8g6q.1 | 8g6s.1 | 8gpn.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8gxq.12 | 8gxq.79 | 8gxs.12 | 8gxs.81 | 8h1t.1 | 8hag.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jh2.1 | 8jh3.1 | 8jh4.1 | 8jhf.1 | 8jhg.1 | 8of4.1 | 8off.1 | 8pki.1 | 8pkj.1 | 8rbx.1 | 8sps.1 | 8spu.1 | 8svf.1 | 8syp.1 | 8thu.1 | 8tof.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8yjf.1 | 8yjm.1