SMTL ID : 5xf5.1

Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,S-configuration)

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.82 Å
Oligo State
hetero-2-2-2-2-mer
Ligands
1 x MG: MAGNESIUM ION(Non-covalent)
2 x RUD: [ethane6-3-(p-tolyl)propanoic acid]Ru(1,3,5-triaza-7-phosphaadamantane)Cl2(Non-covalent)
1 x RSK: (1S,2R)-1,2-diphenylethane-1,2-diamine(Non-covalent)
1 x SO4: SULFATE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Davey, G.E. et al., Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation. Nat Commun (2017)
Release Date
2017-10-11
Peptides
Histone H3.1: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-J: DH
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
E
E
B
B
F
F
C
C
G
G
D
D
H
H