SMTL ID : 5fbe.1

COMPLEMENT FACTOR D IN COMPLEX WITH COMPOUND2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.116, V.117, V.148, L.149, D.150, R.151, M.169, C.170 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.117, A:V.117, A:R.151, A:C.170 Water bridges: A:D.116

1 x 5W5: methyl 2-[[[(2~{S})-2-[[3-(trifluoromethyloxy)phenyl]carbamoyl]pyrrolidin-1-yl]carbonylamino]methyl]benzoate(Non-covalent)

5W5.2: 20 residues within 4Å: Chain A: H.24, L.25, C.26, H.41, C.42, W.128, G.129, I.130, R.137, S.178, C.179, K.180, G.181, S.183, V.197, S.199, G.200, S.201, R.202, C.204 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.25, A:K.180, A:K.180 Hydrogen bonds: A:L.25, A:G.181, A:S.183, A:S.199 Salt bridges: A:R.202 Halogen bonds: A:K.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maibaum, J. et al., Small-molecule factor D inhibitors targeting the alternative complement pathway. Nat.Chem.Biol. (2016)

Release Date

2016-10-26

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement factor D

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