SMTL ID : 5nar.1

Complement factor D in complex with the inhibitor (S)-pyrrolidine-1,2-dicarboxylic acid 1-[(1-carbamoyl-1H-indol-3-yl)-amide] 2-[(3-trifluoromethoxy-phenyl)-amide]

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: A.9, H.10, E.64 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.10

1 x 8RW: (2~{S})-~{N}1-(1-aminocarbonylindol-3-yl)-~{N}2-[3-(trifluoromethyloxy)phenyl]pyrrolidine-1,2-dicarboxamide(Non-covalent)

8RW.2: 20 residues within 4Å: Chain A: H.24, L.25, C.26, H.41, W.128, G.129, I.130, R.137, S.178, C.179, K.180, G.181, S.183, V.197, T.198, S.199, G.200, S.201, R.202, C.204 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.25, A:K.180, A:K.180, A:R.202 Hydrogen bonds: A:L.25, A:G.181, A:S.183, A:T.198, A:S.199, A:R.202 Water bridges: A:R.137, A:G.200, A:S.201 Halogen bonds: A:K.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorthiois, E. et al., Discovery of Highly Potent and Selective Small-Molecule Reversible Factor D Inhibitors Demonstrating Alternative Complement Pathway Inhibition in Vivo. J. Med. Chem. (2017)

Release Date

2017-06-28

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement factor D

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