SMTL ID : 5mt0.1

COMPLEMENT FACTOR D IN COMPLEX WITH A REVERSIBLE INDOLE CARBOXYLIC ACID BASED INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x QJS: 5-fluoranyl-3-[[(1~{S},2~{S})-2-phenylcyclopropyl]carbonylamino]-1~{H}-indole-2-carboxylic acid(Non-covalent)

QJS.1: 14 residues within 4Å: Chain A: H.24, L.25, C.26, H.41, C.42, W.128, G.129, I.130, R.137, K.180, G.181, D.182, S.183, S.199 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.25, A:I.130, A:R.137 Hydrogen bonds: A:L.25, A:L.25, A:G.181, A:S.183, A:S.183, A:S.199 Salt bridges: A:K.180 pi-Cation interactions: A:R.137, A:K.180

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: D.114, R.115, D.116, R.151, E.166, R.215 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.114, A:D.114, A:D.116, A:R.151, A:R.151 Water bridges: A:R.215 Salt bridges: A:R.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vulpetti, A. et al., Structure-Based Library Design and Fragment Screening for the Identification of Reversible Complement Factor D Protease Inhibitors. J. Med. Chem. (2017)

Release Date

2017-02-15

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement factor D

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