SMTL ID : 5fbi.1

COMPLEMENT FACTOR D IN COMPLEX WITH COMPOUND 3b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.116, V.117, V.148, L.149, D.150, R.151, M.169, C.170 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.117, A:R.151, A:C.170 Water bridges: A:D.116

1 x 5WD: 3-[(2-aminocarbonyl-1~{H}-indol-5-yl)oxymethyl]benzoic acid(Non-covalent)

5WD.2: 10 residues within 4Å: Chain A: S.178, C.179, K.180, S.183, V.197, T.198, G.200, S.201, R.202, C.204 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.180, A:K.180 Hydrogen bonds: A:S.183, A:R.202, A:R.202, A:R.202 Water bridges: A:S.178, A:S.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maibaum, J. et al., Small-molecule factor D inhibitors targeting the alternative complement pathway. Nat.Chem.Biol. (2016)

Release Date

2016-10-26

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement factor D

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