SMTL ID : 5nat.1

Complement factor D in complex with the inhibitor (S)-Pyrrolidine-1,2-dicarboxylic acid 1-[(1-methyl-1H-indol-3-yl)-amide] 2-[(3-trifluoromethoxy-phenyl)-amide]

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.17 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.116, V.117, V.148, L.149, D.150, R.151, M.169, C.170 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.117, A:V.117, A:R.151, A:C.170 Water bridges: A:D.116 GOL.2: 7 residues within 4Å: Chain A: L.122, C.123, D.124, V.188, C.189, G.190, G.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.190, A:G.191 Water bridges: A:L.122

1 x 8RT: (2~{S})-~{N}1-(1-methylindol-3-yl)-~{N}2-[3-(trifluoromethyloxy)phenyl]pyrrolidine-1,2-dicarboxamide(Non-covalent)

8RT.3: 18 residues within 4Å: Chain A: H.24, L.25, C.26, H.41, C.42, W.128, G.129, I.130, R.137, C.179, K.180, G.181, S.183, S.199, G.200, S.201, R.202, C.204 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.25, A:K.180 Hydrogen bonds: A:L.25, A:G.181, A:S.183, A:S.199 Water bridges: A:K.180, A:K.180 Halogen bonds: A:K.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorthiois, E. et al., Discovery of Highly Potent and Selective Small-Molecule Reversible Factor D Inhibitors Demonstrating Alternative Complement Pathway Inhibition in Vivo. J.Med.Chem. (2017)

Release Date

2018-03-21

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement factor D

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