SMTL ID : 6ftz.1

COMPLEMENT FACTOR D COMPLEXED WITH COMPOUND 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x E7E: ~{N}4-[3-(aminomethyl)phenyl]-1~{H}-indole-2,4-dicarboxamide(Non-covalent)

E7E.1: 13 residues within 4Å: Chain A: D.177, S.178, C.179, K.180, S.183, V.197, T.198, S.199, S.201, R.202, V.203, C.204, G.211 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.180, A:K.180, A:V.197, A:R.202 Hydrogen bonds: A:S.178, A:S.178, A:K.180, A:S.183, A:R.202 Water bridges: A:S.183, A:I.212 pi-Cation interactions: A:K.180, A:R.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vulpetti, A. et al., Discovery and Design of First Benzylamine-Based Ligands Binding to an Unlocked Conformation of the Complement Factor D. ACS Med Chem Lett (2018)

Release Date

2018-06-06

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement factor D

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