SMTL ID : 6fty.1

COMPLEMENT FACTOR D COMPLEXED WITH COMPOUND 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x E7H: 4-[[(5~{S},7~{R})-3-azanyl-1-adamantyl]carbonylamino]-1~{H}-indole-2-carboxamide(Non-covalent)

E7H.1: 16 residues within 4Å: Chain A: L.25, C.26, H.41, C.42, S.178, C.179, K.180, G.181, S.183, V.197, T.198, S.199, G.200, S.201, R.202, C.204 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.25, A:H.41, A:K.180, A:K.180 Hydrogen bonds: A:G.181, A:S.183, A:S.183, A:S.201, A:R.202, A:R.202, A:R.202 Water bridges: A:S.178, A:S.178

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: D.116, V.117, V.148, L.149, D.150, R.151, M.169, C.170 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.116, A:V.117, A:V.117, A:R.151, A:C.170 Water bridges: A:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vulpetti, A. et al., Discovery and Design of First Benzylamine-Based Ligands Binding to an Unlocked Conformation of the Complement Factor D. ACS Med Chem Lett (2018)

Release Date

2018-06-06

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement factor D

Related Entries With Identical Sequence