SMTL ID : 5ie1.1

Crystal structure of BACE1 in complex with 3-(2-amino-6-(o-tolyl)quinolin-3-yl)-N-(3,3-dimethylbutyl)propanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: T.122, E.123, S.124 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: K.126 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: R.115 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: R.368, R.370 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 13 residues within 4Å: Chain A: K.28, S.29, G.30, Q.31, G.32, Y.33, V.189, S.248, G.249, T.250, T.251, A.354, E.358 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.28, A:G.30, A:G.249, A:E.358 GOL.6: 3 residues within 4Å: Chain A: R.69, Y.70, Q.72 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.70, A:Y.70 Water bridges: A:Q.72, A:Q.72

1 x 6BS: 3-[2-amino-6-(2-methylphenyl)quinolin-3-yl]-N-(3,3-dimethylbutyl)propanamide(Non-covalent)

6BS.7: 15 residues within 4Å: Chain A: D.51, G.53, S.54, V.88, Y.90, G.93, K.94, W.95, K.126, F.127, I.137, R.147, Y.217, D.247, T.250 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.90, A:Y.90, A:Y.90, A:Y.90, A:W.95, A:F.127, A:F.127, A:I.137 Hydrogen bonds: A:G.53, A:Y.217, A:D.247 pi-Stacking: A:Y.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jordan, J.B. et al., Fragment-Linking Approach Using (19)F NMR Spectroscopy To Obtain Highly Potent and Selective Inhibitors of beta-Secretase. J.Med.Chem. (2016)

Release Date

2016-03-30

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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