SMTL ID : 5is6.1

Crystal structure of mouse CARM1 in complex with Sinefungin at 2.0 Angstroms resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-tetramer

Ligands

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 13 residues within 4Å: Chain A: Q.23, Y.24, F.27, Y.28, M.134, G.135, Y.136, N.140, E.141, H.289, W.290, K.345 Ligands: SFG.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.134, A:E.141 Water bridges: A:Y.136, A:W.290 PG4.8: 7 residues within 4Å: Chain B: R.9, S.10, E.118, E.119, V.120, S.121, K.152 No protein-ligand interaction detected (PLIP) PG4.14: 12 residues within 4Å: Chain C: Q.23, Y.24, F.27, Y.28, M.134, G.135, Y.136, N.140, E.141, H.289, W.290, K.345 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:M.134, C:W.290 Water bridges: C:Y.136, C:N.140

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: Q.48, L.52, Q.79 Chain D: D.332, Q.333, T.334, G.335 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.79 EDO.9: 4 residues within 4Å: Chain B: D.40, L.287, T.288, H.289 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.36 EDO.10: 4 residues within 4Å: Chain B: A.21, V.22, F.25, K.116 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.116 EDO.15: 3 residues within 4Å: Chain C: D.267, W.278, S.280 1 PLIP interactions: 1 interactions with chain C Water bridges: C:S.280 EDO.16: 4 residues within 4Å: Chain C: D.40, L.287, H.289, Y.291 No protein-ligand interaction detected (PLIP) EDO.17: 6 residues within 4Å: Chain B: D.332, T.334, G.335 Chain C: Q.48, L.52, Q.79 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.332 EDO.21: 6 residues within 4Å: Chain D: Q.23, Y.24, F.27, Y.28, E.141, K.345 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.23, D:Q.23 EDO.22: 3 residues within 4Å: Chain D: D.40, L.287, H.289 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.36

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 8 residues within 4Å: Chain A: D.57, S.157, G.158, N.159, L.235, I.271, G.272, S.273 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.159, A:N.159 PEG.4: 7 residues within 4Å: Chain A: Y.178, F.182, V.206, D.207, F.210, Q.298, S.299 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.298, A:N.340 PEG.18: 6 residues within 4Å: Chain C: K.151, L.154, K.155, P.156, G.158, L.235 1 PLIP interactions: 1 interactions with chain C Water bridges: C:E.236

6 x DXE: 1,2-DIMETHOXYETHANE(Non-covalent)

DXE.5: 3 residues within 4Å: Chain A: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) DXE.6: 7 residues within 4Å: Chain A: N.36, D.40, L.287, T.288, H.289, Y.291, Y.351 No protein-ligand interaction detected (PLIP) DXE.11: 7 residues within 4Å: Chain B: Q.23, Y.24, F.27, Y.28, Y.136, E.141, K.345 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.140 DXE.12: 4 residues within 4Å: Chain B: D.267, W.278, S.280, E.285 No protein-ligand interaction detected (PLIP) DXE.19: 6 residues within 4Å: Chain C: F.182, V.206, D.207, F.210, Q.298, S.299 1 PLIP interactions: 1 interactions with chain C Water bridges: C:D.207 DXE.23: 4 residues within 4Å: Chain D: D.267, W.278, S.280, E.285 No protein-ligand interaction detected (PLIP)

4 x SFG: SINEFUNGIN(Non-covalent)

SFG.7: 29 residues within 4Å: Chain A: F.12, Y.24, F.25, Y.28, Q.34, M.37, M.38, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 Ligands: PG4.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Q.34, A:G.67, A:G.69, A:E.89, A:E.89, A:A.90, A:V.117, A:E.118, A:E.132 Water bridges: A:R.15, A:E.132 Salt bridges: A:R.43 pi-Stacking: A:F.25 SFG.13: 27 residues within 4Å: Chain B: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:Q.34, B:G.67, B:G.69, B:E.89, B:E.89, B:A.90, B:V.117, B:E.118, B:E.132 Water bridges: B:R.15, B:Q.34, B:E.132 Salt bridges: B:R.43 pi-Stacking: B:F.25 SFG.20: 29 residues within 4Å: Chain C: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, M.38, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:Q.34, C:G.67, C:G.69, C:E.89, C:A.90, C:V.117, C:E.118, C:E.132 Water bridges: C:R.15 Salt bridges: C:R.43 pi-Stacking: C:F.25 SFG.24: 28 residues within 4Å: Chain D: F.12, Y.24, F.25, Y.28, Q.34, M.37, M.38, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:Q.34, D:G.67, D:G.69, D:E.89, D:E.89, D:A.90, D:V.117, D:E.118, D:E.132 Water bridges: D:R.15, D:E.132 Salt bridges: D:R.43 pi-Stacking: D:F.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cura, V. et al., Crystal structure of mouse CARM1 in complex with Sinefungin at 2.0 Angstroms resolution. To Be Published

Release Date

2017-03-15

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Histone-arginine methyltransferase CARM1

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