SMTL ID : 5is7.1

Crystal structure of mouse CARM1 in complex with decarboxylated SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: P.283, T.284, E.285, P.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.283 EDO.5: 3 residues within 4Å: Chain B: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain B: Q.23, Y.24, F.27, Y.28, E.141 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.141, B:E.141 Water bridges: B:N.140 EDO.8: 3 residues within 4Å: Chain C: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) EDO.10: 4 residues within 4Å: Chain D: D.267, W.278, S.280, E.285 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: Y.24, F.27, Y.28, Y.136, N.140, E.141 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.141, A:E.141 Water bridges: A:N.140 PEG.3: 4 residues within 4Å: Chain A: D.267, W.278, S.280, E.285 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.280

4 x DSH: 5'-S-(3-aminopropyl)-5'-thioadenosine(Non-covalent)

DSH.4: 27 residues within 4Å: Chain A: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.34, A:R.43, A:G.67, A:G.69, A:E.89, A:E.89, A:A.90, A:S.91, A:V.117, A:E.118, A:H.289 pi-Stacking: A:F.25 DSH.7: 26 residues within 4Å: Chain B: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.67, B:G.69, B:E.89, B:E.89, B:A.90, B:S.91, B:V.117, B:E.118, B:H.289, B:W.290 pi-Stacking: B:F.25 DSH.9: 26 residues within 4Å: Chain C: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:Q.34, C:G.67, C:G.69, C:E.89, C:E.89, C:A.90, C:S.91, C:V.117, C:E.118, C:H.289, C:W.290 pi-Stacking: C:F.25 DSH.11: 28 residues within 4Å: Chain D: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, G.67, C.68, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, S.131, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:E.89, D:E.89, D:A.90, D:V.117, D:E.118, D:H.289, D:W.290 pi-Stacking: D:F.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cura, V. et al., Crystal structure of mouse CARM1 in complex with decarboxylated SAH. To Be Published

Release Date

2017-03-15

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Histone-arginine methyltransferase CARM1

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