SMTL ID : 5isi.1

Crystal structure of mouse CARM1 in complex with inhibitor SA0920 (5'-amino-5'-deoxyadenosine)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

homo-tetramer

Ligands

4 x 5N5: 5'-amino-5'-deoxyadenosine(Non-covalent)

5N5.1: 21 residues within 4Å: Chain A: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, M.143, S.146 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.67, A:G.67, A:E.89, A:E.89, A:A.90, A:S.91, A:V.117, A:E.118 pi-Stacking: A:F.25 5N5.4: 19 residues within 4Å: Chain B: F.12, R.15, Y.24, F.25, Y.28, Q.34, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, M.143, S.146 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.67, B:E.89, B:E.89, B:A.90, B:S.91, B:V.117, B:E.118 pi-Stacking: B:F.25 5N5.7: 19 residues within 4Å: Chain C: F.12, Y.24, F.25, Y.28, Q.34, M.37, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, M.143, S.146 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:G.67, C:E.89, C:E.89, C:A.90, C:S.91, C:V.117, C:E.118, C:E.132 pi-Stacking: C:F.25 5N5.10: 20 residues within 4Å: Chain D: F.12, R.15, Y.24, F.25, Y.28, Q.34, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:E.89, D:E.89, D:A.90, D:S.91, D:V.117, D:E.118, D:E.132 pi-Stacking: D:F.25

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain B: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain B: Q.23, Y.24, F.27, E.141, K.345 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.23, B:E.141, B:K.345 EDO.8: 2 residues within 4Å: Chain C: W.278, S.280 No protein-ligand interaction detected (PLIP) EDO.11: 6 residues within 4Å: Chain D: Q.23, Y.24, F.27, Y.28, E.141, K.345 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.23, D:E.141, D:K.345 EDO.12: 2 residues within 4Å: Chain D: W.278, S.280 No protein-ligand interaction detected (PLIP)

2 x DXE: 1,2-DIMETHOXYETHANE(Non-covalent)

DXE.3: 6 residues within 4Å: Chain A: Q.23, Y.24, F.27, Y.28, E.141, K.345 No protein-ligand interaction detected (PLIP) DXE.9: 7 residues within 4Å: Chain C: Q.23, Y.24, F.27, Y.28, Y.136, N.140, E.141 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cura, V. et al., Crystal structure of mouse CARM1 in complex with inhibitor SA0920 (5'-amino-5'-deoxyadenosine). To Be Published

Release Date

2017-03-15

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Histone-arginine methyltransferase CARM1

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