SMTL ID : 5isg.1

Crystal structure of mouse CARM1 in complex with inhibitor SA0707

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-tetramer

Ligands

3 x DXE: 1,2-DIMETHOXYETHANE(Non-covalent)

DXE.1: 7 residues within 4Å: Chain A: Q.23, Y.24, F.27, Y.28, Y.136, E.141 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) DXE.2: 3 residues within 4Å: Chain A: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) DXE.11: 6 residues within 4Å: Chain B: N.36, D.40, L.287, T.288, H.289, Y.291 No protein-ligand interaction detected (PLIP)

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain A: Y.28, M.134, G.135, Y.136, E.141, H.289, W.290 Ligands: DXE.1, 6D6.9 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: P.283, T.284, E.285, P.286 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: F.27, Y.30, S.32, Q.33 Chain B: N.346 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: L.287, T.288, H.289, Y.291, Y.351 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain B: Y.24, F.27, Y.28, N.140, E.141 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain B: D.267, W.278, S.280 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain B: P.248, F.249, K.250, S.310, G.311, T.312 Ligand excluded by PLIP EDO.15: 1 residues within 4Å: Chain B: Q.79 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain C: Q.23, Y.24, F.27, Y.28, E.141, K.345 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain C: F.182, V.206, F.210, Q.298 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain C: K.151, L.154, K.155, P.156, L.235 Ligand excluded by PLIP EDO.20: 1 residues within 4Å: Chain C: H.55 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain C: D.40, L.287, T.288, H.289, Y.291 Ligand excluded by PLIP EDO.22: 2 residues within 4Å: Chain C: W.278, S.280 Ligand excluded by PLIP EDO.24: 4 residues within 4Å: Chain D: D.267, W.278, S.280, E.285 Ligand excluded by PLIP EDO.25: 5 residues within 4Å: Chain D: L.122, P.123, E.124, Q.125, Y.153 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain D: D.40, L.287, T.288, H.289 Ligand excluded by PLIP EDO.27: 3 residues within 4Å: Chain D: E.246, T.312, V.328 Ligand excluded by PLIP

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.7: 4 residues within 4Å: Chain A: V.328, Q.330, K.337, S.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.337

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 8 residues within 4Å: Chain A: D.57, S.157, G.158, N.159, L.235, I.271, G.272, S.273 No protein-ligand interaction detected (PLIP) PEG.28: 9 residues within 4Å: Chain D: Q.23, Y.24, F.27, Y.28, Y.136, N.140, E.141, K.345, F.349 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Q.23

4 x 6D6: 5'-{[(3S)-3-amino-3-carboxypropyl](3-aminopropyl)amino}-5'-deoxyadenosine(Non-covalent)

6D6.9: 32 residues within 4Å: Chain A: F.12, Y.24, F.25, Y.28, Q.34, M.37, M.38, R.43, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, W.290 Ligands: EDO.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:Q.34, A:C.68, A:G.69, A:E.89, A:E.89, A:A.90, A:S.91, A:V.117, A:E.118, A:M.134 Water bridges: A:R.15, A:G.71, A:E.132 Salt bridges: A:R.43, A:E.132 pi-Stacking: A:F.25, A:F.25 6D6.16: 32 residues within 4Å: Chain B: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:Q.34, B:G.67, B:C.68, B:G.69, B:S.70, B:E.89, B:E.89, B:A.90, B:V.117, B:E.118, B:M.134, B:W.290 Water bridges: B:R.15, B:G.71, B:L.73, B:E.132 Salt bridges: B:R.43, B:E.132 pi-Stacking: B:F.25 6D6.23: 32 residues within 4Å: Chain C: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:E.132 Hydrogen bonds: C:Q.34, C:C.68, C:E.89, C:E.89, C:A.90, C:S.91, C:V.117, C:E.132, C:S.146 Water bridges: C:R.15, C:E.132 Salt bridges: C:R.43 pi-Stacking: C:F.25 6D6.29: 30 residues within 4Å: Chain D: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, W.290 17 PLIP interactions: 17 interactions with chain D Hydrophobic interactions: D:Y.28 Hydrogen bonds: D:Q.34, D:C.68, D:S.70, D:E.89, D:E.89, D:A.90, D:S.91, D:V.117, D:E.118, D:E.132 Water bridges: D:R.15, D:G.71, D:E.132 Salt bridges: D:R.43, D:E.132 pi-Stacking: D:F.25

1 x M2M: 1-METHOXY-2-(2-METHOXYETHOXY)ETHANE(Non-covalent)

M2M.10: 7 residues within 4Å: Chain A: F.182, G.203, V.206, D.207, F.210, Q.298, S.299 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cura, V. et al., Crystal structure of mouse CARM1 in complex with inhibitor SA0707. To Be Published

Release Date

2017-03-15

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Histone-arginine methyltransferase CARM1

Related Entries With Identical Sequence