SMTL ID : 5isc.1

Crystal structure of mouse CARM1 in complex with inhibitor SA0491

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

2 x SAO: 5'-S-[(3S)-3-azaniumyl-3-carboxypropyl]-5'-thioadenosine(Non-covalent)

SAO.1: 26 residues within 4Å: Chain A: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.34, A:Q.34, A:G.67, A:E.89, A:E.89, A:A.90, A:V.117, A:E.118 Salt bridges: A:R.43 pi-Stacking: A:F.25 SAO.7: 25 residues within 4Å: Chain C: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, M.143, S.146 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:Q.34, C:G.67, C:E.89, C:E.89, C:A.90, C:V.117, C:E.118, C:S.146 Water bridges: C:G.71 Salt bridges: C:R.43 pi-Stacking: C:F.25

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.151, L.154, K.155, P.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.151 Water bridges: A:L.235 EDO.3: 1 residues within 4Å: Chain A: W.278 No protein-ligand interaction detected (PLIP) EDO.4: 5 residues within 4Å: Chain A: D.40, L.287, T.288, H.289, Y.291 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.291 EDO.6: 3 residues within 4Å: Chain B: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) EDO.8: 2 residues within 4Å: Chain C: Y.24, F.27 No protein-ligand interaction detected (PLIP) EDO.12: 3 residues within 4Å: Chain D: Q.23, Y.24, F.27 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Q.23

2 x 6D0: 5'-{[(3S)-3-amino-3-carboxypropyl](3-bromo-2-oxopropyl)amino}-5'-deoxyadenosine(Non-covalent)

6D0.5: 28 residues within 4Å: Chain B: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, E.141, M.143, S.146, W.290 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Y.28, B:Q.34, B:R.43, B:G.67, B:E.89, B:E.89, B:A.90, B:V.117, B:E.118 Salt bridges: B:R.43, B:E.132 pi-Stacking: B:F.25 6D0.11: 28 residues within 4Å: Chain D: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, E.141, M.143, S.146, W.290 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:E.89, D:E.89, D:A.90, D:V.117, D:E.118 Salt bridges: D:R.43 pi-Stacking: D:F.25

2 x DXE: 1,2-DIMETHOXYETHANE(Non-covalent)

DXE.9: 2 residues within 4Å: Chain C: D.267, W.278 No protein-ligand interaction detected (PLIP) DXE.13: 2 residues within 4Å: Chain D: W.278, S.280 No protein-ligand interaction detected (PLIP)

1 x M2M: 1-METHOXY-2-(2-METHOXYETHOXY)ETHANE(Non-covalent)

M2M.10: 7 residues within 4Å: Chain C: S.157, G.158, N.159, L.235, I.271, G.272, S.273 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cura, V. et al., Crystal structure of mouse CARM1 in complex with inhibitor SA0491. To Be Published

Release Date

2017-03-15

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Histone-arginine methyltransferase CARM1

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