SMTL ID : 5lv3.1

Crystal structure of mouse CARM1 in complex with ligand LH1561Br

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 27 residues within 4Å: Chain A: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.34, A:G.67, A:G.69, A:E.89, A:E.89, A:A.90, A:V.117, A:E.118 Water bridges: A:R.15, A:E.132 Salt bridges: A:R.43 pi-Stacking: A:F.25 SAH.4: 26 residues within 4Å: Chain D: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, M.143, S.146 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:Q.34, D:G.67, D:E.89, D:E.89, D:A.90, D:V.117, D:E.118 Water bridges: D:R.15, D:G.71, D:E.132 Salt bridges: D:R.43 pi-Stacking: D:F.25

2 x LHF: 5-[[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethylamino]methyl]-4-azanyl-1-[2-(4-bromanylphenoxy)ethyl]pyrimidin-2-one(Non-covalent)

LHF.2: 31 residues within 4Å: Chain B: F.12, R.15, Q.23, Y.24, F.25, F.27, Y.28, Q.34, M.37, R.43, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, Y.136, N.140, E.141, M.143, S.146, W.290, K.345 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.24, B:Y.28, B:E.141 Hydrogen bonds: B:G.69, B:E.89, B:E.89, B:A.90, B:V.117, B:E.118, B:E.132, B:E.141, B:W.290 Water bridges: B:R.15, B:Q.34, B:Q.34, B:N.140 pi-Stacking: B:F.25, B:F.27 LHF.3: 31 residues within 4Å: Chain C: F.12, R.15, Q.23, Y.24, F.25, F.27, Y.28, Q.34, M.37, R.43, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, Y.136, N.140, E.141, M.143, S.146, W.290, K.345 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:Y.24, C:Y.28 Hydrogen bonds: C:Q.34, C:R.43, C:G.69, C:E.89, C:A.90, C:V.117, C:E.118, C:E.132, C:E.141 Water bridges: C:R.15 pi-Stacking: C:F.25, C:F.27 Halogen bonds: C:Q.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halby, L. et al., Hijacking DNA methyltransferase transition state analogues to produce chemical scaffolds for PRMT inhibitors. Philos. Trans. R. Soc. Lond., B, Biol. Sci. (2018)

Release Date

2017-09-20

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Histone-arginine methyltransferase CARM1

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