SMTL ID : 5ise.1 (1 other biounit)

Crystal structure of mouse CARM1 in complex with inhibitor SA0649

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x 6D2: 5'-{[(3S)-3-amino-3-carboxypropyl](3-carbamimidamidopropyl)amino}-5'-deoxyadenosine(Non-covalent)

6D2.1: 33 residues within 4Å: Chain A: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 Ligands: PGE.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:Q.34, A:G.67, A:G.69, A:E.89, A:E.89, A:A.90, A:S.91, A:V.117, A:S.146, A:H.289, A:H.289, A:W.290 Water bridges: A:R.15, A:E.132 Salt bridges: A:R.43, A:E.132, A:E.132, A:E.141 pi-Stacking: A:F.25 6D2.7: 31 residues within 4Å: Chain B: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:Q.34, B:C.68, B:G.69, B:S.70, B:S.70, B:E.89, B:E.89, B:A.90, B:V.117, B:E.118, B:W.290 Water bridges: B:R.15, B:L.73, B:E.132, B:Y.136, B:E.141 Salt bridges: B:R.43, B:E.132, B:E.132, B:E.141 pi-Stacking: B:F.25 6D2.11: 33 residues within 4Å: Chain C: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 Ligands: PGE.13 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:Q.34, C:G.67, C:G.69, C:E.89, C:E.89, C:A.90, C:S.91, C:V.117, C:S.146, C:H.289, C:H.289, C:W.290 Water bridges: C:R.15, C:E.132 Salt bridges: C:R.43, C:E.132, C:E.132, C:E.141 pi-Stacking: C:F.25 6D2.17: 31 residues within 4Å: Chain D: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 21 PLIP interactions: 21 interactions with chain D Hydrogen bonds: D:Q.34, D:C.68, D:G.69, D:S.70, D:S.70, D:E.89, D:E.89, D:A.90, D:V.117, D:E.118, D:W.290 Water bridges: D:R.15, D:L.73, D:E.132, D:Y.136, D:E.141 Salt bridges: D:R.43, D:E.132, D:E.132, D:E.141 pi-Stacking: D:F.25

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: P.283, T.284, E.285, P.286 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.287 EDO.4: 6 residues within 4Å: Chain A: D.40, L.287, T.288, H.289, Y.291, Y.351 No protein-ligand interaction detected (PLIP) EDO.12: 4 residues within 4Å: Chain C: P.283, T.284, E.285, P.286 1 PLIP interactions: 1 interactions with chain C Water bridges: C:L.287 EDO.14: 6 residues within 4Å: Chain C: D.40, L.287, T.288, H.289, Y.291, Y.351 No protein-ligand interaction detected (PLIP)

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 12 residues within 4Å: Chain A: Q.23, Y.24, F.27, Y.28, G.135, Y.136, N.140, E.141, H.289, W.290, K.345 Ligands: 6D2.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.23 Water bridges: A:Q.23, A:Y.24 PGE.13: 12 residues within 4Å: Chain C: Q.23, Y.24, F.27, Y.28, G.135, Y.136, N.140, E.141, H.289, W.290, K.345 Ligands: 6D2.11 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.23 Water bridges: C:Q.23, C:Y.24

4 x DXE: 1,2-DIMETHOXYETHANE(Non-covalent)

DXE.5: 3 residues within 4Å: Chain A: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) DXE.9: 7 residues within 4Å: Chain B: Q.23, Y.24, F.27, Y.28, N.140, E.141, K.345 No protein-ligand interaction detected (PLIP) DXE.15: 3 residues within 4Å: Chain C: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) DXE.19: 7 residues within 4Å: Chain D: Q.23, Y.24, F.27, Y.28, N.140, E.141, K.345 No protein-ligand interaction detected (PLIP)

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 3 residues within 4Å: Chain A: Q.48, L.52, Q.79 No protein-ligand interaction detected (PLIP) PEG.10: 3 residues within 4Å: Chain B: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) PEG.16: 3 residues within 4Å: Chain C: Q.48, L.52, Q.79 No protein-ligand interaction detected (PLIP) PEG.20: 3 residues within 4Å: Chain D: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP)

2 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-covalent)

PE8.8: 11 residues within 4Å: Chain B: S.10, P.114, G.115, K.116, E.118, E.119, V.120, S.121, Q.125, K.152, Y.153 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.10, B:K.116, B:E.119 Water bridges: B:K.116, B:K.116, B:K.152, B:Y.153 PE8.18: 11 residues within 4Å: Chain D: S.10, P.114, G.115, K.116, E.118, E.119, V.120, S.121, Q.125, K.152, Y.153 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.10, D:K.116, D:E.119 Water bridges: D:K.116, D:K.116, D:K.152, D:Y.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cura, V. et al., Crystal structure of mouse CARM1 in complex with SAH at 1.8 Angstroms resolution. To Be Published

Release Date

2017-03-15

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Histone-arginine methyltransferase CARM1

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