SMTL ID : 5ise.2 (1 other biounit)

Crystal structure of mouse CARM1 in complex with inhibitor SA0649

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x 6D2: 5'-{[(3S)-3-amino-3-carboxypropyl](3-carbamimidamidopropyl)amino}-5'-deoxyadenosine(Non-covalent)

6D2.1: 32 residues within 4Å: Chain A: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:Y.24, A:Q.34, A:G.67, A:E.89, A:E.89, A:A.90, A:V.117, A:S.146, A:W.290 Water bridges: A:R.15, A:Q.34, A:E.132, A:Y.136 Salt bridges: A:R.43, A:E.132, A:E.132, A:E.141 pi-Stacking: A:F.25 6D2.6: 32 residues within 4Å: Chain B: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:Q.34, B:C.68, B:C.68, B:G.69, B:S.70, B:E.89, B:E.89, B:A.90, B:S.91, B:V.117, B:E.118, B:W.290 Water bridges: B:R.15, B:L.73, B:E.132, B:Y.136, B:E.141 Salt bridges: B:R.43, B:E.132, B:E.132, B:E.141 pi-Stacking: B:F.25 6D2.9: 32 residues within 4Å: Chain C: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:Y.24, C:Q.34, C:G.67, C:E.89, C:E.89, C:A.90, C:V.117, C:S.146, C:W.290 Water bridges: C:R.15, C:Q.34, C:E.132, C:Y.136 Salt bridges: C:R.43, C:E.132, C:E.132, C:E.141 pi-Stacking: C:F.25 6D2.14: 32 residues within 4Å: Chain D: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, E.141, M.143, S.146, H.289, W.290 22 PLIP interactions: 22 interactions with chain D Hydrogen bonds: D:Q.34, D:C.68, D:C.68, D:G.69, D:S.70, D:E.89, D:E.89, D:A.90, D:S.91, D:V.117, D:E.118, D:W.290 Water bridges: D:R.15, D:L.73, D:E.132, D:Y.136, D:E.141 Salt bridges: D:R.43, D:E.132, D:E.132, D:E.141 pi-Stacking: D:F.25

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Q.23, Y.24, F.27, Y.28, E.141, K.345 No protein-ligand interaction detected (PLIP) EDO.7: 3 residues within 4Å: Chain B: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) EDO.10: 6 residues within 4Å: Chain C: Q.23, Y.24, F.27, Y.28, E.141, K.345 No protein-ligand interaction detected (PLIP) EDO.15: 3 residues within 4Å: Chain D: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP)

4 x DXE: 1,2-DIMETHOXYETHANE(Non-covalent)

DXE.3: 7 residues within 4Å: Chain A: Q.39, D.40, L.287, T.288, H.289, Y.291, Y.351 No protein-ligand interaction detected (PLIP) DXE.4: 4 residues within 4Å: Chain A: Q.48, L.52, Q.79 Chain B: G.195 No protein-ligand interaction detected (PLIP) DXE.11: 7 residues within 4Å: Chain C: Q.39, D.40, L.287, T.288, H.289, Y.291, Y.351 No protein-ligand interaction detected (PLIP) DXE.12: 4 residues within 4Å: Chain C: Q.48, L.52, Q.79 Chain D: G.195 No protein-ligand interaction detected (PLIP)

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 3 residues within 4Å: Chain A: D.267, W.278, S.280 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.278, A:E.285 PEG.8: 8 residues within 4Å: Chain B: Q.23, Y.24, F.27, Y.28, Y.136, N.140, E.141, F.349 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.23, B:Q.23 Water bridges: B:N.140 PEG.13: 3 residues within 4Å: Chain C: D.267, W.278, S.280 2 PLIP interactions: 2 interactions with chain C Water bridges: C:W.278, C:E.285 PEG.16: 8 residues within 4Å: Chain D: Q.23, Y.24, F.27, Y.28, Y.136, N.140, E.141, F.349 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.23, D:Q.23 Water bridges: D:N.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cura, V. et al., Crystal structure of mouse CARM1 in complex with SAH at 1.8 Angstroms resolution. To Be Published

Release Date

2017-03-15

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

Histone-arginine methyltransferase CARM1

Related Entries With Identical Sequence