SMTL ID : 5ish.1

Crystal structure of mouse CARM1 in complex with inhibitor SA0765

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

4 x 765: 5'-{1-[(3S)-3-amino-3-carboxypropyl]aziridin-1-ium-1-yl}-5'-deoxyadenosine(Non-covalent)

765.1: 25 residues within 4Å: Chain A: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, M.143, S.146 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Q.34, A:G.67, A:E.89, A:E.89, A:A.90, A:S.91, A:V.117, A:E.118 Water bridges: A:R.15, A:Q.34, A:E.132 Salt bridges: A:R.43, A:E.132 pi-Stacking: A:F.25 765.8: 27 residues within 4Å: Chain B: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, M.143, S.146 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Q.34, B:G.67, B:E.89, B:E.89, B:A.90, B:V.117, B:E.118 Water bridges: B:R.15, B:G.71 Salt bridges: B:R.43, B:E.132 pi-Stacking: B:F.25 765.13: 27 residues within 4Å: Chain C: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:Q.34, C:G.67, C:E.89, C:E.89, C:A.90, C:V.117, C:E.118 Water bridges: C:R.15, C:G.71 Salt bridges: C:R.43, C:E.132 pi-Stacking: C:F.25 765.22: 26 residues within 4Å: Chain D: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, M.143, S.146 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:Q.34, D:G.67, D:E.89, D:E.89, D:A.90, D:S.91, D:V.117, D:E.118 Water bridges: D:R.15, D:Q.34, D:G.71, D:E.132 Salt bridges: D:R.43, D:E.132 pi-Stacking: D:F.25

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: P.283, T.284, E.285, P.286 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.287 EDO.9: 3 residues within 4Å: Chain B: D.267, W.278, S.280 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.280, B:E.285 EDO.10: 6 residues within 4Å: Chain B: Q.23, Y.24, F.27, Y.28, E.141, K.345 No protein-ligand interaction detected (PLIP) EDO.14: 6 residues within 4Å: Chain C: Q.23, Y.24, F.27, Y.28, E.141, K.345 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.23 EDO.15: 4 residues within 4Å: Chain C: N.159, I.271, G.272, S.273 No protein-ligand interaction detected (PLIP) EDO.16: 4 residues within 4Å: Chain C: P.283, T.284, E.285, P.286 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.284 Water bridges: C:L.287 EDO.17: 4 residues within 4Å: Chain C: T.56, D.57, K.61, S.273 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.57, C:D.57, C:K.61 EDO.23: 3 residues within 4Å: Chain D: D.267, W.278, S.280 1 PLIP interactions: 1 interactions with chain D Water bridges: D:E.285

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 8 residues within 4Å: Chain A: Q.23, Y.24, F.27, Y.28, Y.136, N.140, E.141, K.345 5 PLIP interactions: 5 interactions with chain A Water bridges: A:Y.136, A:Y.136, A:E.141, A:E.141, A:K.345 PEG.4: 4 residues within 4Å: Chain A: N.159, I.271, G.272, S.273 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.159, A:N.159 PEG.5: 7 residues within 4Å: Chain A: Q.48, L.52, Q.79 Chain D: D.332, Q.333, T.334, G.335 No protein-ligand interaction detected (PLIP) PEG.11: 7 residues within 4Å: Chain B: N.36, Q.39, D.40, L.287, T.288, H.289, Y.291 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.36

6 x DXE: 1,2-DIMETHOXYETHANE(Non-covalent)

DXE.6: 4 residues within 4Å: Chain A: D.267, W.278, S.280, E.285 No protein-ligand interaction detected (PLIP) DXE.18: 3 residues within 4Å: Chain C: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) DXE.19: 7 residues within 4Å: Chain C: Y.178, F.182, V.206, D.207, F.210, Q.298, S.299 No protein-ligand interaction detected (PLIP) DXE.20: 6 residues within 4Å: Chain C: K.151, L.154, K.155, P.156, L.235, E.236 No protein-ligand interaction detected (PLIP) DXE.21: 7 residues within 4Å: Chain B: D.332, T.334, G.335 Chain C: Q.48, L.52, Q.79 Chain D: G.195 No protein-ligand interaction detected (PLIP) DXE.24: 8 residues within 4Å: Chain D: Q.23, Y.24, F.27, Y.28, Y.136, N.140, E.141, F.349 No protein-ligand interaction detected (PLIP)

1 x M2M: 1-METHOXY-2-(2-METHOXYETHOXY)ETHANE(Non-covalent)

M2M.7: 8 residues within 4Å: Chain A: Y.178, F.182, V.206, D.207, F.210, Q.298, S.299, P.300 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.178, A:D.207, A:S.299 Water bridges: A:D.207

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.12: 5 residues within 4Å: Chain B: S.10, E.118, E.119, V.120, K.152 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cura, V. et al., Crystal structure of mouse CARM1 in complex with inhibitor SA0765. To Be Published

Release Date

2017-03-15

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Histone-arginine methyltransferase CARM1

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