SMTL ID : 5isd.1

Crystal structure of mouse CARM1 in complex with inhibitor SA0592

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: Y.24, F.27, Y.28, E.141 Ligands: M2M.6 No protein-ligand interaction detected (PLIP) EDO.2: 6 residues within 4Å: Chain A: K.151, L.154, K.155, P.156, S.157, L.235 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.151 EDO.3: 5 residues within 4Å: Chain A: L.287, T.288, H.289, Y.291, Y.351 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.288, A:Y.351 Water bridges: A:D.40 EDO.8: 3 residues within 4Å: Chain B: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP) EDO.9: 4 residues within 4Å: Chain B: Y.24, F.27, E.141, K.345 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.345 EDO.12: 3 residues within 4Å: Chain C: Y.24, F.27, K.345 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.345 EDO.13: 1 residues within 4Å: Chain C: W.278 No protein-ligand interaction detected (PLIP) EDO.14: 4 residues within 4Å: Chain C: D.40, L.287, T.288, H.289 No protein-ligand interaction detected (PLIP) EDO.16: 3 residues within 4Å: Chain D: D.267, W.278, S.280 No protein-ligand interaction detected (PLIP)

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 4 residues within 4Å: Chain A: D.267, W.278, S.280, E.285 No protein-ligand interaction detected (PLIP) PEG.5: 7 residues within 4Å: Chain A: S.157, G.158, N.159, L.235, I.271, G.272, S.273 No protein-ligand interaction detected (PLIP) PEG.10: 4 residues within 4Å: Chain B: S.121, Q.125, K.152, Y.153 No protein-ligand interaction detected (PLIP)

1 x M2M: 1-METHOXY-2-(2-METHOXYETHOXY)ETHANE(Non-covalent)

M2M.6: 13 residues within 4Å: Chain A: Y.28, M.37, E.132, P.133, M.134, G.135, Y.136, N.140, E.141, H.289, W.290 Ligands: EDO.1, SAO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.290

3 x SAO: 5'-S-[(3S)-3-azaniumyl-3-carboxypropyl]-5'-thioadenosine(Non-covalent)

SAO.7: 27 residues within 4Å: Chain A: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, M.143, S.146 Ligands: M2M.6 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.34, A:Q.34, A:G.67, A:G.69, A:E.89, A:E.89, A:A.90, A:S.91, A:V.117, A:E.118 Salt bridges: A:R.43 pi-Stacking: A:F.25 SAO.15: 29 residues within 4Å: Chain C: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, M.38, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:Q.34, C:G.67, C:G.69, C:E.89, C:E.89, C:A.90, C:S.91, C:V.117, C:E.118 Water bridges: C:E.132 Salt bridges: C:R.43 pi-Stacking: C:F.25 SAO.17: 27 residues within 4Å: Chain D: F.12, Y.24, F.25, Y.28, Q.34, M.37, R.43, D.65, G.67, C.68, G.69, S.70, G.71, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.143, S.146 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:Q.34, D:Q.34, D:G.67, D:G.69, D:E.89, D:E.89, D:A.90, D:V.117, D:E.118 Water bridges: D:E.132 Salt bridges: D:R.43 pi-Stacking: D:F.25

1 x 6CZ: 5'-{[(3S)-3-amino-3-carboxypropyl](3-ethoxy-2,3-dioxopropyl)amino}-5'-deoxyadenosine(Non-covalent)

6CZ.11: 31 residues within 4Å: Chain B: Y.24, F.25, Y.28, Q.33, Q.34, M.37, R.43, G.67, C.68, G.69, S.70, I.72, L.73, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, G.135, Y.136, E.141, M.143, S.146, H.289, W.290 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:Y.24, B:Q.34, B:G.67, B:G.69, B:E.89, B:E.89, B:A.90, B:V.117, B:E.118, B:W.290 Salt bridges: B:R.43, B:E.132, B:H.289 pi-Stacking: B:F.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cura, V. et al., Crystal structure of mouse CARM1 in complex with inhibitor SA0592. To Be Published

Release Date

2017-03-15

Peptides

Histone-arginine methyltransferase CARM1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Histone-arginine methyltransferase CARM1

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