SMTL ID : 5uyu.1

Crystal structure of BACE1 in complex with 2-aminooxazoline-3-azaxanthene compound 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

5 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.64, T.122, E.123, S.124 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: H.64, K.126 Ligand excluded by PLIP IOD.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: Q.74 Ligand excluded by PLIP IOD.5: 4 residues within 4Å: Chain A: G.30, G.32, T.251 Ligands: 8QV.6 Ligand excluded by PLIP

1 x 8QV: (5S)-3-(3,6-dihydro-2H-pyran-4-yl)-7-[5-(prop-1-yn-1-yl)pyridin-3-yl]-5'H-spiro[1-benzopyrano[2,3-c]pyridine-5,4'-[1,3]oxazol]-2'-amine(Non-covalent)

8QV.6: 23 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, G.53, S.54, V.88, Y.90, W.95, F.127, I.129, W.134, I.137, R.147, Y.217, D.247, S.248, G.249, T.250, T.251, A.354 Ligands: IOD.5 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.49, A:V.88, A:Y.90, A:F.127, A:W.134, A:I.137, A:A.354 Hydrogen bonds: A:D.51, A:Y.217 Water bridges: A:R.147, A:R.147 pi-Stacking: A:Y.90

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: R.69, Y.70, Q.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.70, A:Y.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Low, J.D. et al., Development of 2-aminooxazoline 3-azaxanthene beta-amyloid cleaving enzyme (BACE) inhibitors with improved selectivity against Cathepsin D. Medchemcomm (2017)

Release Date

2017-05-17

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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