SMTL ID : 5vcw.2 (1 other biounit)

CRYSTAL STRUCTURE OF HUMAN MYT1 KINASE DOMAIN IN COMPLEX WITH Pelitinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x 93J: (2E)-N-{4-[(3-chloro-4-fluorophenyl)amino]-3-cyano-7-ethoxyquinolin-6-yl}-4-(dimethylamino)but-2-enamide(Non-covalent)

93J.1: 14 residues within 4Å: Chain A: L.65, V.73, A.86, K.88, V.120, L.134, T.136, E.137, L.138, C.139, G.140, P.141, Q.145, F.189 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.65, A:V.73, A:L.138, A:F.189 Hydrogen bonds: A:T.136, A:C.139, A:Q.145 Halogen bonds: A:A.86, A:L.134

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: Q.144, R.221 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.144 Salt bridges: A:R.221 SO4.3: 3 residues within 4Å: Chain A: A.152, S.153, N.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.153, A:N.251 SO4.4: 4 residues within 4Å: Chain A: G.96, P.97, K.98, D.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.96, A:K.98, A:D.99 SO4.5: 1 residues within 4Å: Chain A: R.30 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.30

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain A: P.155, E.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors. J. Med. Chem. (2017)

Release Date

2017-08-23

Peptides

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

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