SMTL ID : 5vd3.1

CRYSTAL STRUCTURE OF HUMAN MYT1 KINASE DOMAIN (de-phosphorylated) IN COMPLEX WITH SARACATINIB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x H8H: N-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-7-[2-(4-METHYLPIPERAZIN-1-YL)ETHOXY]-5-(TETRAHYDRO-2H-PYRAN-4-YLOXY)QUINAZOLIN-4-AMINE(Non-covalent)

H8H.1: 23 residues within 4Å: Chain A: S.63, L.65, G.66, Y.70, V.73, A.86, V.87, K.88, E.106, V.120, L.134, T.136, E.137, L.138, C.139, G.140, P.141, S.142, Q.145, A.186, F.189, D.200 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.88, A:L.138 Hydrogen bonds: A:K.88, A:C.139

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: W.160, E.280, V.307 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.160, A:E.280 EDO.3: 5 residues within 4Å: Chain A: Y.70, V.73, K.88, D.200 Ligands: H8H.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.200

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain A: R.61, L.62, S.63, R.64, F.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.64 Water bridges: A:R.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors. J. Med. Chem. (2017)

Release Date

2017-08-23

Peptides

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

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