SMTL ID : 8d6e.2 (1 other biounit)

Crystal Structure of Human Myt1 Kinase domain Bounded with RP-6306

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: Q.158, Y.162, G.194 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.146, A:Y.162, A:Y.162, A:G.194, A:G.194 EDO.4: 1 residues within 4Å: Ligands: SO4.2 No protein-ligand interaction detected (PLIP) EDO.5: 2 residues within 4Å: Chain A: Q.144, R.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.144, A:R.221, A:R.221 EDO.6: 3 residues within 4Å: Chain A: P.141, H.146, W.150 No protein-ligand interaction detected (PLIP) EDO.7: 3 residues within 4Å: Chain A: D.182, K.184, L.203 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.184 EDO.8: 5 residues within 4Å: Chain A: E.217, G.218, M.223, L.227, Y.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.218, A:Y.232 EDO.9: 2 residues within 4Å: Chain A: G.258, E.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.259

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.96, P.97, K.98, D.99 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.96, A:K.98, A:D.99

1 x QGI: (1P)-2-amino-1-(3-hydroxy-2,6-dimethylphenyl)-5,6-dimethyl-1H-pyrrolo[2,3-b]pyridine-3-carboxamide(Non-covalent)

QGI.3: 16 residues within 4Å: Chain A: L.65, Y.70, V.73, A.86, K.88, E.106, H.110, V.120, T.136, E.137, L.138, C.139, G.140, F.189, G.199, D.200 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.73, A:V.73, A:K.88, A:T.136, A:F.189, A:F.189 Hydrogen bonds: A:T.136, A:E.137, A:C.139, A:C.139, A:D.200 Water bridges: A:F.201 pi-Cation interactions: A:K.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szychowski, J. et al., Discovery of an Orally Bioavailable and Selective PKMYT1 Inhibitor, RP-6306. J.Med.Chem. (2022)

Release Date

2022-07-27

Peptides

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

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