SMTL ID : 8d6c.2 (1 other biounit)

Crystal Structure of Human Myt1 Kinase domain Bounded with compound 28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: H.146, A.149, W.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.146 EDO.2: 3 residues within 4Å: Chain A: Q.56, R.61, R.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.89, A:R.89

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: G.96, P.97, K.98, D.99 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.96, A:G.96, A:K.98, A:D.99

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: L.207, Y.232, G.233 No protein-ligand interaction detected (PLIP)

1 x QGR: (1P)-2-amino-6-bromo-1-(3-hydroxy-2,6-dimethylphenyl)-1H-pyrrolo[2,3-b]quinoxaline-3-carboxamide(Non-covalent)

QGR.5: 17 residues within 4Å: Chain A: L.65, G.66, Y.70, V.73, A.86, K.88, H.110, V.120, T.136, E.137, L.138, C.139, G.140, Q.145, F.189, G.199, D.200 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.73, A:V.73, A:K.88, A:V.120, A:T.136, A:F.189, A:F.189 Hydrogen bonds: A:H.110, A:T.136, A:E.137, A:C.139, A:C.139, A:D.200 Water bridges: A:F.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szychowski, J. et al., Discovery of an Orally Bioavailable and Selective PKMYT1 Inhibitor, RP-6306. J.Med.Chem. (2022)

Release Date

2022-07-27

Peptides

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

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