SMTL ID : 8wjy.1

PKMYT1_Cocrystal_Cpd 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x W9X: [6-azanyl-5-(2,6-dimethyl-3-oxidanyl-phenyl)-2,3-dimethyl-pyrrolo[2,3-b]pyrazin-7-yl]-(6,7-dihydro-4~{H}-pyrazolo[1,5-a]pyrazin-5-yl)methanone(Non-covalent)

W9X.1: 18 residues within 4Å: Chain A: L.65, G.66, Y.70, V.73, A.86, K.88, H.110, V.120, T.136, E.137, L.138, C.139, G.140, P.141, Q.145, F.189, G.199, D.200 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.65, A:V.73, A:V.73, A:A.86, A:K.88, A:V.120, A:T.136, A:F.189 Hydrogen bonds: A:H.110, A:T.136, A:C.139, A:D.200 Water bridges: A:K.88, A:E.106, A:Q.145

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: Y.70, K.88, D.200 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.88 Salt bridges: A:D.200 pi-Cation interactions: A:Y.70

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: S.63, R.64, F.74 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.64 Water bridges: A:R.61, A:R.61, A:L.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Discovery of Tetrahydropyrazolopyrazine Derivatives as Potent and Selective MYT1 Inhibitors for the Treatment of Cancer. J.Med.Chem. (2024)

Release Date

2023-11-22

Peptides

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

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