SMTL ID : 5vcy.1

CRYSTAL STRUCTURE OF HUMAN MYT1 KINASE DOMAIN IN COMPLEX WITH BOSUTINIB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x DB8: 4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile(Non-covalent)

DB8.1: 22 residues within 4Å: Chain A: L.65, G.66, V.73, A.86, V.87, K.88, E.106, V.120, L.134, Q.135, T.136, E.137, L.138, C.139, G.140, P.141, S.142, Q.145, N.187, F.189, D.200 Ligands: DMS.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.73, A:L.138, A:F.189, A:F.189 Hydrogen bonds: A:K.88, A:T.136, A:C.139, A:Q.145 Halogen bonds: A:E.106

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: E.259, Q.263 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.263 Water bridges: A:E.259, A:Q.263 EDO.3: 7 residues within 4Å: Chain A: F.20, Q.21, F.94, G.96, P.97, R.100 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain A: P.93, F.94, R.100, G.129, G.130 Ligands: EDO.3 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: R.61, L.62, S.63, R.64, F.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.64

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 5 residues within 4Å: Chain A: Y.70, V.73, K.88, D.200 Ligands: DB8.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.88 Salt bridges: A:D.200 pi-Cation interactions: A:Y.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors. J. Med. Chem. (2017)

Release Date

2017-08-23

Peptides

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

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