SMTL ID : 8d6c.1 (1 other biounit)

Crystal Structure of Human Myt1 Kinase domain Bounded with compound 28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: Q.56, R.61, R.89 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.56, A:R.61, A:R.61, A:R.89 EDO.3: 3 residues within 4Å: Chain A: A.152, S.153, N.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.153, A:N.251

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.96, P.97, K.98, D.99 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.96, A:G.96, A:K.98, A:D.99 Salt bridges: A:R.95

1 x QGR: (1P)-2-amino-6-bromo-1-(3-hydroxy-2,6-dimethylphenyl)-1H-pyrrolo[2,3-b]quinoxaline-3-carboxamide(Non-covalent)

QGR.4: 15 residues within 4Å: Chain A: L.65, G.66, Y.70, V.73, A.86, K.88, H.110, V.120, T.136, E.137, L.138, C.139, G.140, F.189, D.200 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.73, A:V.73, A:A.86, A:K.88, A:T.136, A:F.189, A:F.189 Hydrogen bonds: A:H.110, A:T.136, A:E.137, A:C.139, A:C.139, A:D.200 Water bridges: A:F.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szychowski, J. et al., Discovery of an Orally Bioavailable and Selective PKMYT1 Inhibitor, RP-6306. J.Med.Chem. (2022)

Release Date

2022-07-27

Peptides

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

Related Entries With Identical Sequence