SMTL ID : 5vcz.1

CRYSTAL STRUCTURE OF HUMAN MYT1 KINASE DOMAIN IN COMPLEX WITH Bosutinib isomer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x XZN: 4-[(3,5-DICHLORO-4-METHOXYPHENYL)AMINO]-6-METHOXY-7-[3-(4-METHYLPIPERAZIN-1-YL)PROPOXY]QUINOLINE-3-CARBONITRILE(Non-covalent)

XZN.1: 22 residues within 4Å: Chain A: L.65, V.73, A.86, V.87, K.88, E.106, H.110, V.120, L.122, L.134, T.136, E.137, L.138, C.139, G.140, P.141, S.142, Q.145, F.189, D.200 Ligands: EDO.3, EDO.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.73, A:A.86, A:L.138, A:F.189 Hydrogen bonds: A:C.139, A:Q.145 Water bridges: A:D.200 pi-Stacking: A:F.189 Halogen bonds: A:L.134

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: S.153, C.250, N.251, M.252, F.273 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.251 EDO.3: 9 residues within 4Å: Chain A: L.65, G.66, Y.70, V.73, K.88, F.189, D.200 Ligands: XZN.1, EDO.4 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Y.70, A:N.187, A:D.200, A:D.200 EDO.4: 5 residues within 4Å: Chain A: Y.70, K.88, D.200 Ligands: XZN.1, EDO.3 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.200, A:D.200, A:G.202 EDO.5: 5 residues within 4Å: Chain A: S.22, P.93, F.94, G.129, G.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.22, A:F.94 Water bridges: A:G.130 EDO.6: 2 residues within 4Å: Chain A: E.259, Q.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.263 Water bridges: A:E.259

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 5 residues within 4Å: Chain A: R.61, L.62, S.63, R.64, F.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.64 Water bridges: A:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors. J. Med. Chem. (2017)

Release Date

2017-08-23

Peptides

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

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