SMTL ID : 5z57.1

Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 6.50 Å
Oligo State
hetero-1-1-1-1-2-2-2-2-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-4-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x I6P: INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE(Non-covalent)
1 x ALA: ALANINE(Non-covalent)
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
10 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Zhang, X. et al., Structure of the human activated spliceosome in three conformational states. Cell Res. (2018)
Release Date
2018-09-19
Peptides
Pre-mRNA-processing-splicing factor 8: A
116 kDa U5 small nuclear ribonucleoprotein component: C
U5 small nuclear ribonucleoprotein 200 kDa helicase: D
U5 small nuclear ribonucleoprotein 40 kDa protein: E
Small nuclear ribonucleoprotein Sm D3: FP
Small nuclear ribonucleoprotein-associated proteins B and B': GQ
Small nuclear ribonucleoprotein Sm D1: HR
Small nuclear ribonucleoprotein Sm D2: IS
Small nuclear ribonucleoprotein F: JT
Small nuclear ribonucleoprotein E: KU
Small nuclear ribonucleoprotein G: LV
U2 small nuclear ribonucleoprotein A': W
U2 small nuclear ribonucleoprotein B'': X
Splicing factor 3A subunit 3: Y
Splicing factor 3A subunit 1: Z
Splicing factor 3A subunit 2: 0
Splicing factor 3B subunit 1: 1
Splicing factor 3B subunit 2: 2
Splicing factor 3B subunit 3: 3
Splicing factor 3B subunit 4: 4
Splicing factor 3B subunit 6: 5
PHD finger-like domain-containing protein 5A: 6
Splicing factor 3B subunit 5: 7
Crooked neck-like protein 1: 8
Cell division cycle 5-like protein: 9
Pre-mRNA-processing factor 19: abcd
Pre-mRNA-splicing factor SPF27: e
Pre-mRNA-splicing factor SYF1: f
Intron-binding protein aquarius: g
Protein BUD31 homolog: h
Pre-mRNA-splicing factor RBM22: i
Spliceosome-associated protein CWC15 homolog: j
Skip: k
Peptidyl-prolyl cis-trans isomerase-like 1: l
Pleiotropic regulator 1: m
Serine/arginine repetitive matrix protein 2: n
Pre-mRNA-splicing factor CWC22 homolog: o
Pre-mRNA-processing factor 17: p
Smad nuclear-interacting protein 1: q
RNA-binding motif protein, X-linked 2: r
BUD13 homolog: s
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16: t
Peptidyl-prolyl cis-trans isomerase E: u
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
D
D
E
E
F
a
P
h
G
b
Q
i
H
c
R
j
I
d
S
k
J
f
T
m
K
e
U
l
L
g
V
n
W
o
X
p
Y
w
Z
u
0
v
1
1
2
2
3
3
4
4
5
5
6
6
7
7
8
J
9
L
a
q
b
r
c
s
d
t
e
K
f
I
g
Q
h
N
i
O
j
P
k
R
l
S
m
T
n
U
o
V
p
W
q
X
r
Y
s
Z
t
x
u
y

Pre-mRNA-processing-splicing factor 8

116 kDa U5 small nuclear ribonucleoprotein component

U5 small nuclear ribonucleoprotein 200 kDa helicase

U5 small nuclear ribonucleoprotein 40 kDa protein

Small nuclear ribonucleoprotein Sm D3

Small nuclear ribonucleoprotein-associated proteins B and B'

Small nuclear ribonucleoprotein Sm D1

Toggle Identical (HR)

Small nuclear ribonucleoprotein Sm D2

Small nuclear ribonucleoprotein F

Toggle Identical (JT)

Small nuclear ribonucleoprotein E

Toggle Identical (KU)

Small nuclear ribonucleoprotein G

U2 small nuclear ribonucleoprotein A'

U2 small nuclear ribonucleoprotein B''

Splicing factor 3A subunit 3

Splicing factor 3A subunit 1

Splicing factor 3A subunit 2

Splicing factor 3B subunit 1

Splicing factor 3B subunit 2

Splicing factor 3B subunit 3

Splicing factor 3B subunit 4

Splicing factor 3B subunit 6

PHD finger-like domain-containing protein 5A

Splicing factor 3B subunit 5

Crooked neck-like protein 1

Cell division cycle 5-like protein

Pre-mRNA-processing factor 19

Pre-mRNA-splicing factor SPF27

Pre-mRNA-splicing factor SYF1

Intron-binding protein aquarius

Protein BUD31 homolog

Pre-mRNA-splicing factor RBM22

Spliceosome-associated protein CWC15 homolog

Skip

Peptidyl-prolyl cis-trans isomerase-like 1

Pleiotropic regulator 1

Serine/arginine repetitive matrix protein 2

Pre-mRNA-splicing factor CWC22 homolog

Pre-mRNA-processing factor 17

Smad nuclear-interacting protein 1

RNA-binding motif protein, X-linked 2

BUD13 homolog

Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

Peptidyl-prolyl cis-trans isomerase E

Related Entries With Identical Sequence

1b34.1 | 2f9d.1 | 2f9d.2 | 2x7k.1 | 4f7u.1 | 4f7u.2 | 4pjo.1 | 4pjo.2 | 4pjo.3 | 4pjo.4 | 4v98.1 | 4v98.2 | 4v98.3 | 4v98.4 | 4v98.5 | 4v98.6 | 4v98.7 | 4v98.8 | 4v98.9 | 4v98.10 | 4v98.11 | 4v98.12 | 4v98.13 | 4v98.14 | 4v98.15 | 4v98.16 | 4v98.17 | 4v98.18 | 4v98.19 | 4v98.20  more...