SMTL ID : 8r0b.1

Cryo-EM structure of the cross-exon pre-B+ATP complex

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-3-1-3-3-3-3-3-3-1-1-1-1-1-1-mer
Ligands
None
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH
Citation
Zhang, Z. et al., Structural insights into the cross-exon to cross-intron spliceosome switch. Nature (2024)
Release Date
2024-05-22
Peptides
Pre-mRNA-processing-splicing factor 8: A
U5 small nuclear ribonucleoprotein 200 kDa helicase: B
Splicing factor 3A subunit 1: G
Splicing factor 3A subunit 2: H
116 kDa U5 small nuclear ribonucleoprotein component: I
Thioredoxin-like protein 4A: J
U5 small nuclear ribonucleoprotein 40 kDa protein: K
Probable ATP-dependent RNA helicase DDX23: L
NHP2-like protein 1, N-terminally processed: M
Ubiquitin carboxyl-terminal hydrolase 39: N
Peptidyl-prolyl cis-trans isomerase H: O
U6 snRNA-associated Sm-like protein LSm6: R
U6 snRNA-associated Sm-like protein LSm7: S
U6 snRNA-associated Sm-like protein LSm2: T
U6 snRNA-associated Sm-like protein LSm3: U
U6 snRNA-associated Sm-like protein LSm8: V
U6 snRNA-associated Sm-like protein LSm4: W
U6 snRNA-associated Sm-like protein LSm5: X
Splicing factor 3B subunit 4: Y
Splicing factor 3A subunit 3: Z
Splicing factor 3B subunit 2: 0
Splicing factor 3B subunit 5: 1
Splicing factor 3B subunit 3: 2
PHD finger-like domain-containing protein 5A: 3
Splicing factor 3B subunit 1: 4
Splicing factor 3B subunit 6: 5
Small nuclear ribonucleoprotein Sm D2: 6hr
U2 small nuclear ribonucleoprotein B'': 7
Small nuclear ribonucleoprotein F: 8io
Small nuclear ribonucleoprotein-associated proteins B and B': 9kq
Small nuclear ribonucleoprotein Sm D3: ajn
Small nuclear ribonucleoprotein G: bls
Small nuclear ribonucleoprotein E: cgm
Small nuclear ribonucleoprotein Sm D1: dfp
U2 small nuclear ribonucleoprotein A': e
U4/U6 small nuclear ribonucleoprotein Prp4: t
U4/U6 small nuclear ribonucleoprotein Prp3: u
U4/U6 small nuclear ribonucleoprotein Prp31: v
Pre-mRNA-processing factor 6: w
U4/U6.U5 tri-snRNP-associated protein 1: x
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
G
7
H
8
I
C
J
D
K
E
L
G
M
M
N
U
O
W
R
66
S
67
T
62
U
63
V
68
W
64
X
65
Y
B4
Z
9
0
B2
1
B5
2
B3
3
BP
4
B1
5
B6
6
22
h
42
r
52
7
2B
8
2f
i
4f
o
5f
9
2b
k
4b
q
5b
a
23
j
43
n
53
b
2g
l
4g
s
5g
c
2e
g
4e
m
5e
d
21
f
41
p
51
e
2A
t
F
u
J
v
L
w
N
x
S

Pre-mRNA-processing-splicing factor 8

U5 small nuclear ribonucleoprotein 200 kDa helicase

Splicing factor 3A subunit 1

Splicing factor 3A subunit 2

116 kDa U5 small nuclear ribonucleoprotein component

Thioredoxin-like protein 4A

U5 small nuclear ribonucleoprotein 40 kDa protein

Probable ATP-dependent RNA helicase DDX23

NHP2-like protein 1, N-terminally processed

Ubiquitin carboxyl-terminal hydrolase 39

Peptidyl-prolyl cis-trans isomerase H

U6 snRNA-associated Sm-like protein LSm6

U6 snRNA-associated Sm-like protein LSm7

U6 snRNA-associated Sm-like protein LSm2

U6 snRNA-associated Sm-like protein LSm3

U6 snRNA-associated Sm-like protein LSm8

U6 snRNA-associated Sm-like protein LSm4

U6 snRNA-associated Sm-like protein LSm5

Splicing factor 3B subunit 4

Splicing factor 3A subunit 3

Splicing factor 3B subunit 2

Splicing factor 3B subunit 5

Splicing factor 3B subunit 3

PHD finger-like domain-containing protein 5A

Splicing factor 3B subunit 1

Splicing factor 3B subunit 6

Small nuclear ribonucleoprotein Sm D2

U2 small nuclear ribonucleoprotein B''

Small nuclear ribonucleoprotein F

Toggle Identical (8i)

Small nuclear ribonucleoprotein-associated proteins B and B'

Small nuclear ribonucleoprotein Sm D3

Small nuclear ribonucleoprotein G

Toggle Identical (ls)

Small nuclear ribonucleoprotein E

Small nuclear ribonucleoprotein Sm D1

Toggle Identical (fp)

U2 small nuclear ribonucleoprotein A'

U4/U6 small nuclear ribonucleoprotein Prp4

U4/U6 small nuclear ribonucleoprotein Prp3

U4/U6 small nuclear ribonucleoprotein Prp31

Pre-mRNA-processing factor 6

U4/U6.U5 tri-snRNP-associated protein 1

Related Entries With Identical Sequence

1b34.1 | 1e7k.1 | 1e7k.2 | 1mzw.1 | 1qgv.1 | 1qoi.1 | 1syx.1 | 1syx.2 | 1syx.3 | 2f9d.1 | 2f9d.2 | 4f7u.1 | 4f7u.2 | 4pjo.1 | 4pjo.2 | 4pjo.3 | 4pjo.4 | 4v98.1 | 4v98.2 | 4v98.3 | 4v98.4 | 4v98.5 | 4v98.6 | 4v98.7 | 4v98.8 | 4v98.9 | 4v98.10 | 4v98.11 | 4v98.12 | 4v98.13  more...