SMTL ID : 5mqf.1

Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-4-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-2-2-2-2-2-2-1-1-1-mer
Ligands
None
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Bertram, K. et al., Cryo-EM structure of a human spliceosome activated for step 2 of splicing. Nature (2017)
Release Date
2017-03-22
Peptides
Pre-mRNA-processing-splicing factor 8: A
116 kDa U5 small nuclear ribonucleoprotein component: B
SNW domain-containing protein 1: C
Pleiotropic regulator 1: D
Pre-mRNA-processing factor 17: E
U5 small nuclear ribonucleoprotein 40 kDa protein: F
Pre-mRNA-processing factor 19: GHIJ
Pre-mRNA-splicing factor SPF27: K
Cell division cycle 5-like protein: L
Pre-mRNA-splicing factor SYF1: M
Pre-mRNA-splicing factor SYF2: N
Crooked neck-like protein 1: O
Pre-mRNA-splicing factor RBM22: P
Protein BUD31 homolog: Q
Spliceosome-associated protein CWC15 homolog: R
Serine/arginine repetitive matrix protein 2: S
Pre-mRNA-splicing factor CWC22 homolog: T
Intron-binding protein aquarius: U
Peptidyl-prolyl cis-trans isomerase-like 1: V
U2 small nuclear ribonucleoprotein A': W
U2 small nuclear ribonucleoprotein B'': X
Small nuclear ribonucleoprotein Sm D2: Y5
Small nuclear ribonucleoprotein F: Z6
Small nuclear ribonucleoprotein E: 07
Small nuclear ribonucleoprotein G: 18
Small nuclear ribonucleoprotein Sm D3: 29
Small nuclear ribonucleoprotein-associated proteins B and B': 3a
Small nuclear ribonucleoprotein Sm D1: 4b
Peptidyl-prolyl cis-trans isomerase E: c
Eukaryotic initiation factor 4A-III: d
ATP-dependent RNA helicase DHX8: e
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
V
W
W
X
X
Y
a
5
h
Z
b
6
i
0
c
7
j
1
d
8
k
2
e
9
l
3
f
a
m
4
g
b
n
c
o
d
p
e
q

Pre-mRNA-processing-splicing factor 8

116 kDa U5 small nuclear ribonucleoprotein component

SNW domain-containing protein 1

Pleiotropic regulator 1

Pre-mRNA-processing factor 17

U5 small nuclear ribonucleoprotein 40 kDa protein

Pre-mRNA-processing factor 19

Toggle Identical (HJ)

Pre-mRNA-splicing factor SPF27

Cell division cycle 5-like protein

Pre-mRNA-splicing factor SYF1

Pre-mRNA-splicing factor SYF2

Crooked neck-like protein 1

Pre-mRNA-splicing factor RBM22

Protein BUD31 homolog

Spliceosome-associated protein CWC15 homolog

Serine/arginine repetitive matrix protein 2

Pre-mRNA-splicing factor CWC22 homolog

Intron-binding protein aquarius

Peptidyl-prolyl cis-trans isomerase-like 1

U2 small nuclear ribonucleoprotein A'

U2 small nuclear ribonucleoprotein B''

Small nuclear ribonucleoprotein Sm D2

Small nuclear ribonucleoprotein F

Small nuclear ribonucleoprotein E

Toggle Identical (07)

Small nuclear ribonucleoprotein G

Toggle Identical (18)

Small nuclear ribonucleoprotein Sm D3

Small nuclear ribonucleoprotein-associated proteins B and B'

Toggle Identical (3a)

Small nuclear ribonucleoprotein Sm D1

Toggle Identical (4b)

Peptidyl-prolyl cis-trans isomerase E

Eukaryotic initiation factor 4A-III

ATP-dependent RNA helicase DHX8

Related Entries With Identical Sequence

1b34.1 | 2x7k.1 | 2xb2.1 | 2xb2.2 | 4c9b.1 | 4f7u.1 | 4f7u.2 | 4pjo.1 | 4pjo.2 | 4pjo.3 | 4pjo.4 | 4v98.1 | 4v98.2 | 4v98.3 | 4v98.4 | 4v98.5 | 4v98.6 | 4v98.7 | 4v98.8 | 4v98.9 | 4v98.10 | 4v98.11 | 4v98.12 | 4v98.13 | 4v98.14 | 4v98.15 | 4v98.16 | 4v98.17 | 4v98.18 | 4v98.19  more...
Protein chains which are C-Alpha only cannot be used for modelling!