- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x K5C: 4-({4-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}thieno[3,2-d]pyrimidin-2-yl)amino]piperidin-1-yl}methyl)benzene-1-sulfonamide(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 2 residues within 4Å:- Chain A: K.104, K.106
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:K.104, A:K.106
SO4.4: 5 residues within 4Å:- Chain A: M.43, K.75, Y.148, P.152, Q.153
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Y.148, A:Q.153, A:Q.153
- Water bridges: A:K.75, A:K.75, A:Y.148
- Salt bridges: A:K.75
SO4.5: 4 residues within 4Å:- Chain A: K.333, G.335, Q.336, K.514
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.336, A:Q.336
- Water bridges: A:K.333, A:G.337
- Salt bridges: A:K.333, A:K.514
SO4.6: 4 residues within 4Å:- Chain A: K.478, S.517, E.518, L.519
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.517, A:E.518, A:L.519
- Salt bridges: A:K.478
SO4.7: 7 residues within 4Å:- Chain A: W.428, Y.429, Q.430, L.527, I.528, K.530, E.531
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.430, A:Q.430, A:K.530
- Water bridges: A:V.533
SO4.8: 6 residues within 4Å:- Chain A: Q.502, W.537
- Chain B: N.265, Q.269, L.422, W.426
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.265, B:Q.269, B:Q.269
SO4.19: 4 residues within 4Å:- Chain A: Q.87
- Chain B: P.55, Y.56, K.126
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Y.56, A:Q.87
- Water bridges: B:Y.56, A:D.88
- Salt bridges: B:K.126
SO4.20: 9 residues within 4Å:- Chain A: T.405, E.406, Y.407, W.408
- Chain B: K.331, Q.332, G.333, K.424
- Ligands: EDO.17
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.332, A:E.406
- Water bridges: B:K.331, B:Q.428, A:K.433
- Salt bridges: B:K.424
SO4.21: 3 residues within 4Å:- Chain B: K.275, V.276, R.277
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Salt bridges: A:K.542
- Hydrogen bonds: B:V.276, B:R.277
SO4.22: 4 residues within 4Å:- Chain B: L.234, H.235, P.236, W.239
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.235, B:H.235
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 5 residues within 4Å:- Chain A: E.8, K.168
- Chain B: K.49, I.50, G.51
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.8
EDO.10: 3 residues within 4Å:- Chain A: K.168, P.172, W.214
No protein-ligand interaction detected (PLIP)EDO.11: 4 residues within 4Å:- Chain A: R.465, D.490, S.491, G.492
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.465
EDO.12: 3 residues within 4Å:- Chain A: T.475, N.476, Q.477
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.476, A:Q.477, A:Q.477
EDO.13: 5 residues within 4Å:- Chain A: S.270, Y.341, G.354, K.355, K.376
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.270, A:Y.341, A:K.355, A:K.376, A:K.376
- Water bridges: A:E.380
EDO.14: 7 residues within 4Å:- Chain A: N.365, K.426, L.427, W.428, Y.429, Q.511, D.513
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.426, A:W.428, A:Y.429, A:Y.429, A:Q.511
EDO.15: 7 residues within 4Å:- Chain A: L.488, S.491, G.492, L.493, Q.526, K.529, K.530
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.526, A:K.530
EDO.16: 3 residues within 4Å:- Chain A: W.90
- Chain B: K.20, K.22
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.22
- Water bridges: B:Q.23
EDO.17: 7 residues within 4Å:- Chain A: E.406, Y.407, W.408, Q.509, Q.511
- Chain B: K.424
- Ligands: SO4.20
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:W.408, B:K.424
- Water bridges: B:K.424
EDO.23: 6 residues within 4Å:- Chain B: E.328, I.329, Q.330, P.392, V.417, P.421
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.328, B:Q.330
EDO.24: 8 residues within 4Å:- Chain B: V.75, D.76, F.77, R.78, N.81, G.152, W.410, I.411
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:V.75, B:F.77, B:N.81, B:I.411
EDO.25: 3 residues within 4Å:- Chain B: Y.183, K.385, T.386
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.183, B:T.386
- Water bridges: B:T.386
EDO.26: 6 residues within 4Å:- Chain B: Q.242, Y.339, K.350, G.352, K.353, Y.354
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.339, B:K.350, B:K.353
EDO.27: 5 residues within 4Å:- Chain B: K.66, Y.232, E.370, Q.373, K.374
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.66
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Y. et al., Structural basis for potent and broad inhibition of HIV-1 RT by thiophene[3,2-d]pyrimidine non-nucleoside inhibitors. Elife (2018)
- Release Date
- 2018-08-01
- Peptides
- Reverse transcriptase/ribonuclease H: A
Reverse transcriptase p51 subunit: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 6c0o.1
Crystal structure of HIV-1 K103N mutant reverse transcriptase in complex with non-nucleoside inhibitor 25a
Reverse transcriptase/ribonuclease H
Reverse transcriptase p51 subunit
Related Entries With Identical Sequence
2ykm.1 | 2ykn.1 | 2zd1.1 | 2ze2.1 | 3bgr.1 | 3ig1.1 | 3irx.1 | 3is9.1 | 3qo9.1 | 3v4i.1 | 3v4i.2 | 3v6d.1 | 3v6d.2 | 3v81.1 | 3v81.2 | 4g1q.1 | 4h4m.1 | 4h4o.1 | 4i2p.1 | 4i2q.1 | 4kko.1 | 4ko0.1 | 4lsl.1 | 4lsn.1 | 4mfb.1 | 4o44.1 | 4o4g.1 | 4pqu.1 | 4pqu.2 | 4puo.1 more...less...4puo.2 | 4pwd.1 | 4pwd.2 | 4q0b.1 | 4q0b.2 | 4r5p.1 | 4r5p.2 | 4rw4.1 | 4rw6.1 | 4rw7.1 | 4rw8.1 | 4rw9.1 | 4we1.1 | 5c25.1 | 5c42.1 | 5cym.1 | 5cyq.1 | 5ter.1 | 5tw3.1 | 5txm.1 | 5txm.2 | 5txn.1 | 5txn.2 | 5txo.1 | 5txo.2 | 5txp.1 | 5txp.2 | 5vqq.1 | 5vqr.1 | 5vqs.1 | 5vqt.1 | 5vqu.1 | 5vqv.1 | 5vqw.1 | 5vqx.1 | 5vqy.1 | 5vqz.1 | 6c0j.1 | 6c0k.1 | 6c0n.1 | 6c0r.1 | 6cgf.1 | 6dtw.1 | 6dtx.1 | 6duf.1 | 6dug.1 | 6duh.1 | 6eli.1 | 6oe3.1 | 6x47.1 | 6x49.1 | 6x4a.1 | 6x4b.1 | 6x4c.1 | 6x4d.1 | 6x4e.1 | 6x4f.1 | 7ahx.1 | 7ahx.2 | 7aid.1 | 7aid.2 | 7aif.1 | 7aif.2 | 7aig.1 | 7aig.2 | 7aii.1 | 7aii.2 | 7aij.1 | 7aij.2 | 7krc.1 | 7krd.1 | 7kre.1 | 7krf.1 | 7ot6.1 | 7ot6.2 | 7ota.1 | 7ota.2 | 7otk.1 | 7otk.2 | 7otn.1 | 7otn.2 | 7otx.1 | 7otx.2 | 7otz.1 | 7otz.2 | 7out.1 | 7out.2 | 7ozw.1 | 7p15.1 | 7snp.1 | 7snz.1 | 7so1.1 | 7so2.1 | 7so3.1 | 7so4.1 | 7so6.1 | 7u5z.1 | 7z24.1 | 7z2d.1 | 7z2g.1 | 8dx2.1 | 8dx3.1 | 8dx8.1 | 8dxb.1 | 8dxe.1 | 8dxg.1 | 8dxh.1 | 8dxi.1 | 8dxj.1 | 8dxk.1 | 8dxl.1 | 8dxm.1 | 8ffx.1 | 8stp.1 | 8stq.1 | 8str.1 | 8sts.1 | 8sts.2 | 8stt.1 | 8stt.2 | 8stu.1 | 8stv.1 | 8stv.2 | 8u69.1 | 8u6a.1 | 8u6b.1 | 8u6c.1 | 8u6d.1 | 8u6e.1 | 8u6f.1 | 8u6g.1 | 8u6h.1 | 8u6h.2 | 8u6i.1 | 8u6j.1 | 8u6k.1 | 8u6l.1 | 8u6m.1 | 8u6n.1 | 8u6o.1 | 8u6p.1 | 8u6q.1 | 8u6r.1 | 8u6s.1 | 8u6t.1 | 8vu9.1 | 8vub.1 | 8vum.1