- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-24-mer
- Ligands
- 60 x SO4: SULFATE ION(Non-functional Binders)
- 12 x EXP: 2-{[(3-bromophenyl)methyl]amino}-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7(6H)-one(Non-covalent)
EXP.37: 13 residues within 4Å:- Chain M: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
- Chain Q: E.134, V.135
10 PLIP interactions:7 interactions with chain M, 3 interactions with chain Q- Hydrophobic interactions: M:T.10, M:A.37, M:F.70, Q:V.135
- Hydrogen bonds: M:D.72, M:M.74
- Water bridges: M:A.75, M:Y.98, Q:E.134
- pi-Stacking: Q:H.138
EXP.40: 13 residues within 4Å:- Chain N: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
- Chain S: E.134, V.135
10 PLIP interactions:7 interactions with chain N, 3 interactions with chain S- Hydrophobic interactions: N:T.10, N:A.37, N:F.70, S:V.135
- Hydrogen bonds: N:D.72, N:M.74
- Water bridges: N:A.75, N:Y.98, S:E.134
- pi-Stacking: S:H.138
EXP.43: 13 residues within 4Å:- Chain O: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
- Chain T: E.134, V.135
8 PLIP interactions:6 interactions with chain O, 2 interactions with chain T- Hydrophobic interactions: O:T.10, O:A.37, O:F.70, T:V.135
- Hydrogen bonds: O:D.72, O:M.74
- Water bridges: O:A.75
- pi-Stacking: T:H.138
EXP.46: 13 residues within 4Å:- Chain P: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
- Chain R: E.134, V.135
8 PLIP interactions:6 interactions with chain P, 2 interactions with chain R- Hydrophobic interactions: P:T.10, P:A.37, P:F.70, R:V.135
- Hydrogen bonds: P:D.72, P:M.74
- Water bridges: P:A.75
- pi-Stacking: R:H.138
EXP.49: 13 residues within 4Å:- Chain Q: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
- Chain U: E.134, V.135
10 PLIP interactions:7 interactions with chain Q, 3 interactions with chain U- Hydrophobic interactions: Q:T.10, Q:A.37, Q:F.70, U:V.135
- Hydrogen bonds: Q:D.72, Q:M.74
- Water bridges: Q:A.75, Q:Y.98, U:E.134
- pi-Stacking: U:H.138
EXP.52: 13 residues within 4Å:- Chain R: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
- Chain W: E.134, V.135
8 PLIP interactions:6 interactions with chain R, 2 interactions with chain W- Hydrophobic interactions: R:T.10, R:A.37, R:F.70, W:V.135
- Hydrogen bonds: R:D.72, R:M.74
- Water bridges: R:A.75
- pi-Stacking: W:H.138
EXP.55: 13 residues within 4Å:- Chain S: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
- Chain X: E.134, V.135
10 PLIP interactions:7 interactions with chain S, 3 interactions with chain X- Hydrophobic interactions: S:T.10, S:A.37, S:F.70, X:V.135
- Hydrogen bonds: S:D.72, S:M.74
- Water bridges: S:A.75, S:Y.98, X:E.134
- pi-Stacking: X:H.138
EXP.58: 13 residues within 4Å:- Chain T: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
- Chain V: E.134, V.135
8 PLIP interactions:6 interactions with chain T, 2 interactions with chain V- Hydrophobic interactions: T:T.10, T:A.37, T:F.70, V:V.135
- Hydrogen bonds: T:D.72, T:M.74
- Water bridges: T:A.75
- pi-Stacking: V:H.138
EXP.61: 13 residues within 4Å:- Chain M: E.134, V.135
- Chain U: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
8 PLIP interactions:6 interactions with chain U, 2 interactions with chain M- Hydrophobic interactions: U:T.10, U:A.37, U:F.70, M:V.135
- Hydrogen bonds: U:D.72, U:M.74
- Water bridges: U:A.75
- pi-Stacking: M:H.138
EXP.64: 13 residues within 4Å:- Chain O: E.134, V.135
- Chain V: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
10 PLIP interactions:7 interactions with chain V, 3 interactions with chain O- Hydrophobic interactions: V:T.10, V:A.37, V:F.70, O:V.135
- Hydrogen bonds: V:D.72, V:M.74
- Water bridges: V:A.75, V:Y.98, O:E.134
- pi-Stacking: O:H.138
EXP.67: 13 residues within 4Å:- Chain P: E.134, V.135
- Chain W: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
10 PLIP interactions:7 interactions with chain W, 3 interactions with chain P- Hydrophobic interactions: W:T.10, W:A.37, W:F.70, P:V.135
- Hydrogen bonds: W:D.72, W:M.74
- Water bridges: W:A.75, W:Y.98, P:E.134
- pi-Stacking: P:H.138
EXP.70: 13 residues within 4Å:- Chain N: E.134, V.135
- Chain X: P.8, G.9, T.10, A.37, F.70, D.72, L.73, M.74, L.102, M.105, N.106
8 PLIP interactions:6 interactions with chain X, 2 interactions with chain N- Hydrophobic interactions: X:T.10, X:A.37, X:F.70, N:V.135
- Hydrogen bonds: X:D.72, X:M.74
- Water bridges: X:A.75
- pi-Stacking: N:H.138
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moreau, R.J. et al., Fragment-Based Drug Discovery of Inhibitors of Phosphopantetheine Adenylyltransferase from Gram-Negative Bacteria. J. Med. Chem. (2018)
- Release Date
- 2018-03-14
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
BI
BJ
BK
BL
BM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-24-mer
- Ligands
- 60 x SO4: SULFATE ION(Non-functional Binders)
- 12 x EXP: 2-{[(3-bromophenyl)methyl]amino}-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7(6H)-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moreau, R.J. et al., Fragment-Based Drug Discovery of Inhibitors of Phosphopantetheine Adenylyltransferase from Gram-Negative Bacteria. J. Med. Chem. (2018)
- Release Date
- 2018-03-14
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
BI
BJ
BK
BL
BM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A